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    EMB2813 DNA primase, large subunit family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843052, updated on 15-Oct-2023

    Summary

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    Gene symbol
    EMB2813
    Gene description
    DNA primase, large subunit family
    Primary source
    Araport:AT1G67320
    Locus tag
    AT1G67320
    See related
    TAIR:AT1G67320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 2813; F1N21.14
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    Genomic context

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    See EMB2813 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Sequence:
    Chromosome: 1; NC_003070.9 (25205279..25209101, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Major facilitator superfamily protein Neighboring gene Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain Neighboring gene Ran BP2/NZF zinc finger-like superfamily protein Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
    2. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001198410.1
    NM_105400.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    DNA primase, large subunit family
    NP_001185339.1
    • DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238).
    NP_001185340.1
    • DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238).
    NP_564893.2
    • DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238); Has 451 Blast hits to 447 proteins in 212 species: Archae - 8; Bacteria - 0; Metazoa - 155; Fungi - 145; Plants - 53; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25205279..25209101 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198411.2 → NP_001185340.1  DNA primase, large subunit family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185340.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WRZ1, Q84WJ2, Q8LFN6, Q9FYG1
      UniProtKB/TrEMBL
      A0A5S9WSR2, A0A654EXI4
      Conserved Domains (1) summary
      cd07322
      Location:23 → 441
      PriL_PriS_Eukaryotic; Eukaryotic core primase: Large subunit, PriL

    2. NM_001198410.1 → NP_001185339.1  DNA primase, large subunit family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185339.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCI7, F4HRU9
      Conserved Domains (1) summary
      cd07322
      Location:23 → 477
      PriL_PriS_Eukaryotic; Eukaryotic core primase: Large subunit, PriL

    3. NM_105400.2 → NP_564893.2  DNA primase, large subunit family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564893.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WSR2, A0A654EXI4, F4HRU7
      Conserved Domains (1) summary
      cd07322
      Location:23 → 436
      PriL_PriS_Eukaryotic; Eukaryotic core primase: Large subunit, PriL
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84WJ2.2

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