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    TBP2 TATA binding protein 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841999, updated on 7-Sep-2023

    Summary

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    Gene symbol
    TBP2
    Gene description
    TATA binding protein 2
    Primary source
    Araport:AT1G55520
    Locus tag
    AT1G55520
    See related
    TAIR:AT1G55520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A. THALIANA TATA BINDING PROTEIN 2; ATTBP2; T5A14.8; T5A14_8; TATA binding protein 2
    Summary
    TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.
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    Genomic context

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    See TBP2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (20725470..20728093, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene protein containing PDZ domain, a K-box domain, and a TPR region Neighboring gene chaperonin 60 beta Neighboring gene evolutionarily conserved C-terminal region 4 Neighboring gene branched-chain alpha-keto acid decarboxylase E1 beta subunit Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Role of the TATA binding protein-transcription factor IIB interaction in supporting basal and activated transcription in plant cells. Pan S, et al. Plant Cell, 2000 Jan. PMID 10634912, Free PMC Article
    2. Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Reiland S, et al. Plant Physiol, 2009 Jun. PMID 19376835, Free PMC Article
    3. Plant class B HSFs inhibit transcription and exhibit affinity for TFIIB and TBP. Czarnecka-Verner E, et al. Plant Mol Biol, 2004 Sep. PMID 15604728
    4. Characterization of two Arabidopsis thaliana myb-like proteins showing affinity to telomeric DNA sequence. Schrumpfová P, et al. Genome, 2004 Apr. PMID 15060584
    5. Interaction between the Arabidopsis thaliana heat shock transcription factor HSF1 and the TATA binding protein TBP. Reindl A, et al. FEBS Lett, 1998 Oct 9. PMID 9801140

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001333716.1
    NM_001333717.1
    NM_104427.4
    NM_179481.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables TBP-class protein binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA-templated transcription initiation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus TAS
    Traceable Author Statement
    more info
    		  

    General protein information

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    Preferred Names
    TATA binding protein 2
    NP_175948.1
    • TATA binding protein 2 (TBP2); CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TATA binding protein 1 (TAIR:AT3G13445.1); Has 2123 Blast hits to 1580 proteins in 405 species: Archae - 736; Bacteria - 0; Metazoa - 578; Fungi - 191; Plants - 155; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).
    NP_849812.1
    • TATA binding protein 2 (TBP2); CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TATA binding protein 1 (TAIR:AT3G13445.1); Has 2123 Blast hits to 1580 proteins in 405 species: Archae - 736; Bacteria - 0; Metazoa - 578; Fungi - 191; Plants - 155; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20725470..20728093 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104427.4 → NP_175948.1  TATA binding protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175948.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P28148, Q53YT7
      UniProtKB/TrEMBL
      A0A178WDQ6, A0A5S9WPW7
      Conserved Domains (1) summary
      PLN00062
      Location:22 → 200
      PLN00062; TATA-box-binding protein; Provisional

    2. NM_001333716.1 → NP_001321102.1  TATA binding protein 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8APV5

    3. NM_001333717.1 → NP_001321103.1  TATA binding protein 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P28148, Q53YT7
      UniProtKB/TrEMBL
      A0A178WDQ6, A0A5S9WPW7
      Conserved Domains (1) summary
      PLN00062
      Location:22 → 200
      PLN00062; TATA-box-binding protein; Provisional

    4. NM_179481.2 → NP_849812.1  TATA binding protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849812.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P28148, Q53YT7
      UniProtKB/TrEMBL
      A0A178WDQ6, A0A5S9WPW7
      Conserved Domains (1) summary
      PLN00062
      Location:22 → 200
      PLN00062; TATA-box-binding protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    1613452A.1
    P28148.1

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