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    Paired amphipathic helix (PAH2) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838992, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Paired amphipathic helix (PAH2) superfamily protein
    Primary source
    TAIR:AT1G23810
    Locus tag
    AT1G23810
    See related
    Araport:AT1G23810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5O8.36; F5O8_36
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (8417495..8418566)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box family protein Neighboring gene dicer-like protein (DUF936) Neighboring gene aldehyde dehydrogenase 2B7 Neighboring gene ncRNA Neighboring gene spermidine synthase Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Paired amphipathic helix (PAH2) superfamily protein
    NP_173793.1
    • Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G24250.1); Has 824 Blast hits to 569 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 300; Fungi - 147; Plants - 338; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8417495..8418566
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102229.1 → NP_173793.1  Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173793.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WF74, A0A178WGF3, Q9ZUB5
      Conserved Domains (2) summary
      COG5602
      Location:4 → 185
      Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
      pfam02671
      Location:126 → 170
      PAH; Paired amphipathic helix repeat
    Nucleotide Protein
    Heading Accession and Version

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