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    IRX15-L IRREGULAR XYLEM protein (DUF579) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836856, updated on 7-Sep-2023

    Summary

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    Gene symbol
    IRX15-L
    Gene description
    IRREGULAR XYLEM protein (DUF579)
    Primary source
    Araport:AT5G67210
    Locus tag
    AT5G67210
    See related
    TAIR:AT5G67210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    IRX15-LIKE; K21H1.17; K21H1_17
    Summary
    Encode a DUF579 (domain of unknown function 579) containing protein essential for normal xylan synthesis and deposition in the secondary cell wall.
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    Genomic context

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    See IRX15-L in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (26818949..26820157)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DREB and EAR motif protein 2 Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene FMN-linked oxidoreductases superfamily protein Neighboring gene ncRNA Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene small RNA degrading nuclease 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis. Jensen JK, et al. Plant J, 2011 May. PMID 21288268
    2. Arabidopsis genes IRREGULAR XYLEM (IRX15) and IRX15L encode DUF579-containing proteins that are essential for normal xylan deposition in the secondary cell wall. Brown D, et al. Plant J, 2011 May. PMID 21251108
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. IRX15 and IRX15-L function in a redundant manner and are involved in xylan biosynthesis.
      Title: The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis.
    2. IRK15 and IRK15L are members of the DUF579 gene family essential for normal xylan deposition during secondary cell wall deposition.
      Title: Arabidopsis genes IRREGULAR XYLEM (IRX15) and IRX15L encode DUF579-containing proteins that are essential for normal xylan deposition in the secondary cell wall.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_126121.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within plant-type secondary cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within xylan biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    IRREGULAR XYLEM protein (DUF579)
    NP_201522.1
    • Protein of unknown function (DUF579); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT3G50220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26818949..26820157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126121.2 → NP_201522.1  IRREGULAR XYLEM protein (DUF579) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201522.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FH92
      UniProtKB/TrEMBL
      A0A178UEM8, A0A5S9YHS0
      Conserved Domains (1) summary
      cl04661
      Location:75 → 303
      Polysacc_synt_4; Polysaccharide biosynthesis
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FH92.1

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