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    PLC5 phosphatidylinositol-speciwc phospholipase C5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835983, updated on 7-Sep-2023

    Summary

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    Gene symbol
    PLC5
    Gene description
    phosphatidylinositol-speciwc phospholipase C5
    Primary source
    Araport:AT5G58690
    Locus tag
    AT5G58690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATPLC5; MZN1.15; MZN1_15; phosphatidylinositol-speciwc phospholipase C5
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    Genomic context

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    See PLC5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (23709529..23712558, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene phospholipase C1 Neighboring gene ARM repeat superfamily protein Neighboring gene phosphatidylinositol-speciwc phospholipase C4 Neighboring gene rotamase CYP 7 Neighboring gene smr (Small MutS Related) domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_001345318.1
    NM_125256.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol phospholipase C activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    phosphatidylinositol-speciwc phospholipase C5
    NP_200677.2
    • phosphatidylinositol-speciwc phospholipase C5 (PLC5); FUNCTIONS IN: phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific, X domain (InterPro:IPR000909), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), EF-hand-like domain (InterPro:IPR011992), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Phosphoinositide-specific phospholipase C family protein (TAIR:AT2G40116.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23709529..23712558 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345317.1 → NP_001332555.1  phosphatidylinositol-speciwc phospholipase C5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BHA9, A0A5S9YFE7, A0A654GCP1

    2. NM_125256.3 → NP_200677.2  phosphatidylinositol-speciwc phospholipase C5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200677.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8W4B4, Q944C2, Q9LUZ0
      UniProtKB/TrEMBL
      A0A5S9YFE7, A0A654GCP1
      Conserved Domains (4) summary
      cd00275
      Location:448 → 577
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      PLN02952
      Location:2 → 577
      PLN02952; phosphoinositide phospholipase C
      pfam09279
      Location:28 → 111
      EF-hand_like; Phosphoinositide-specific phospholipase C, efhand-like
      cl14615
      Location:111 → 417
      PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

    3. NM_001345318.1 → NP_001332556.1  phosphatidylinositol-speciwc phospholipase C5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8W4B4, Q944C2, Q9LUZ0
      UniProtKB/TrEMBL
      A0A5S9YFE7, A0A654GCP1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q944C2.2

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