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    AT5G55950 Nucleotide/sugar transporter family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835693, updated on 18-Aug-2023

    Summary

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    Gene symbol
    AT5G55950
    Gene description
    Nucleotide/sugar transporter family protein
    Primary source
    Araport:AT5G55950
    Locus tag
    AT5G55950
    See related
    TAIR:AT5G55950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MYN21.6; MYN21_6
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    Genomic context

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    See AT5G55950 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (22658112..22660505, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene oligopeptide transporter 1 Neighboring gene ncRNA Neighboring gene Uncharacterized protein family (UPF0172) Neighboring gene transmembrane protein C9orf5 protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001345172.1
    NM_001345173.1
    NM_001345174.1
    NM_124977.4

    General protein information

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    Preferred Names
    Nucleotide/sugar transporter family protein
    NP_200406.1
    • Nucleotide/sugar transporter family protein; INVOLVED IN: N-terminal protein myristoylation, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: inflorescence meristem, petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT5G57100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22658112..22660505 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124977.4 → NP_200406.1  Nucleotide/sugar transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200406.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MFP6, Q8LB26, Q9FG70
      UniProtKB/TrEMBL
      A0A178UMI0, A0A5S9YEF9
      Conserved Domains (1) summary
      cl26744
      Location:84 → 339
      TPT; Triose-phosphate Transporter family

    2. NM_001345172.1 → NP_001332486.1  Nucleotide/sugar transporter family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BH28

    3. NM_001345173.1 → NP_001332488.1  Nucleotide/sugar transporter family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMI0, A0A1P8BH41, A0A5S9YEF9

    4. NM_001345174.1 → NP_001332487.1  Nucleotide/sugar transporter family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMI0, A0A1P8BH42, A0A5S9YEF9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FG70.1

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