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    NOI RPM1-interacting protein 4 (RIN4) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835679, updated on 6-Oct-2023

    Summary

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    Gene symbol
    NOI
    Gene description
    RPM1-interacting protein 4 (RIN4) family protein
    Primary source
    Araport:AT5G55850
    Locus tag
    AT5G55850
    See related
    TAIR:AT5G55850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MWJ3.3; MWJ3_3; NOI PROTEIN
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    Genomic context

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    See NOI in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (22603302..22605300)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene PPR superfamily protein Neighboring gene Ubiquitin-like superfamily protein Neighboring gene Ubiquitin-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana genes expressed in the early compatible interaction with root-knot nematodes. Vercauteren I, et al. Mol Plant Microbe Interact, 2001 Mar. PMID 11277426
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    NM_001161310.1
    NM_001345164.1
    NM_124967.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to nematode IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    RPM1-interacting protein 4 (RIN4) family protein
    NP_001154782.1
    • NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT2G04410.1); Has 285 Blast hits to 284 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 283; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_001318805.1
    • NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT2G04410.1).
    NP_200396.2
    • NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT2G04410.1); Has 284 Blast hits to 283 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22603302..22605300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345164.1 → NP_001318805.1  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K693, F4K694, O22633, Q9M3R9
      UniProtKB/TrEMBL
      A0A178UE20, A0A5S9YEW9, A0A654GBI5
      Conserved Domains (1) summary
      pfam05627
      Location:3 → 38
      AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr

    2. NM_001161310.1 → NP_001154782.1  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154782.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K692
      Conserved Domains (1) summary
      pfam05627
      Location:19 → 54
      AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr

    3. NM_124967.3 → NP_200396.2  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200396.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K693
      Conserved Domains (1) summary
      pfam05627
      Location:3 → 38
      AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22633.1

    Gene LinkOut

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