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    AT5G16380 autophagy-like protein, putative (Protein of unknown function, DUF538) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831499, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G16380
    Gene description
    autophagy-like protein, putative (Protein of unknown function, DUF538)
    Primary source
    Araport:AT5G16380
    Locus tag
    AT5G16380
    See related
    TAIR:AT5G16380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQK4.11; MQK4_11
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    Genomic context

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    See AT5G16380 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (5359307..5360710, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene acyl activating enzyme 5 Neighboring gene tRNA-Ser Neighboring gene chloroplastic acetylcoenzyme A carboxylase 1 Neighboring gene thioredoxin F2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_121643.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    autophagy-like protein, putative (Protein of unknown function, DUF538)
    NP_568330.1
    • Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT3G07470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5359307..5360710 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121643.4 → NP_568330.1  autophagy-like protein, putative (Protein of unknown function, DUF538) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568330.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U922, A0A654G1Z8, Q8LFQ4, Q8VZN3
      Conserved Domains (1) summary
      pfam04398
      Location:32 → 138
      DUF538; Protein of unknown function, DUF538
    Nucleotide Protein
    Heading Accession and Version

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