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    AT5G13890 plant viral-response family protein (DUF716) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831236, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G13890
    Gene description
    plant viral-response family protein (DUF716)
    Primary source
    Araport:AT5G13890
    Locus tag
    AT5G13890
    See related
    TAIR:AT5G13890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAC12.15; MAC12_15
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    Genomic context

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    See AT5G13890 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (4478787..4481149, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase/hydrolase 5 Neighboring gene cotton fiber protein Neighboring gene miscRNA Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene GRF zinc finger / Zinc knuckle protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_121392.3
    NM_180485.3
    NM_180486.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    plant viral-response family protein (DUF716)
    NP_196893.1
    • Family of unknown function (DUF716); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_850816.1
    • Family of unknown function (DUF716); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32120.1); Has 219 Blast hits to 219 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_850817.1
    • Family of unknown function (DUF716); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32120.1); Has 219 Blast hits to 219 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4478787..4481149 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121392.3 → NP_196893.1  plant viral-response family protein (DUF716) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196893.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UD36, A0A654G1H0, Q8L8U5, Q9FFY4
      Conserved Domains (1) summary
      pfam04819
      Location:135 → 257
      DUF716; Family of unknown function (DUF716)

    2. NM_180486.2 → NP_850817.1  plant viral-response family protein (DUF716) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850817.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UD36, A0A654G1H0, Q8L8U5, Q9FFY4
      Conserved Domains (1) summary
      pfam04819
      Location:135 → 257
      DUF716; Family of unknown function (DUF716)

    3. NM_180485.3 → NP_850816.1  plant viral-response family protein (DUF716) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850816.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UD36, A0A654G1H0, Q8L8U5, Q9FFY4
      Conserved Domains (1) summary
      pfam04819
      Location:135 → 257
      DUF716; Family of unknown function (DUF716)
    Nucleotide Protein
    Heading Accession and Version

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