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    AT5G04420 Galactose oxidase/kelch repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830321, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G04420
    Gene description
    Galactose oxidase/kelch repeat superfamily protein
    Primary source
    Araport:AT5G04420
    Locus tag
    AT5G04420
    See related
    TAIR:AT5G04420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T19N18.4
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    Genomic context

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    See AT5G04420 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Sequence:
    Chromosome: 5; NC_003076.8 (1246604..1249943, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NAC domain protein Neighboring gene NAC domain containing protein 2 Neighboring gene ncRNA Neighboring gene binding to TOMV RNA 1L (long form) Neighboring gene RAP release 2, galactose-binding-like domain protein, putative (DUF1997)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036755.2
    NM_001036756.2
    NM_120524.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Galactose oxidase/kelch repeat superfamily protein
    NP_001031832.1
    • Galactose oxidase/kelch repeat superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 4 (TAIR:AT3G05420.1); Has 8531 Blast hits to 4263 proteins in 348 species: Archae - 19; Bacteria - 246; Metazoa - 3206; Fungi - 1070; Plants - 1911; Viruses - 10; Other Eukaryotes - 2069 (source: NCBI BLink).
    NP_001031833.1
    • Galactose oxidase/kelch repeat superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 4 (TAIR:AT3G05420.1); Has 8531 Blast hits to 4263 proteins in 348 species: Archae - 19; Bacteria - 246; Metazoa - 3206; Fungi - 1070; Plants - 1911; Viruses - 10; Other Eukaryotes - 2069 (source: NCBI BLink).
    NP_196062.1
    • Galactose oxidase/kelch repeat superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 4 (TAIR:AT3G05420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1246604..1249943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120524.3 → NP_196062.1  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196062.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US13, A0A5S9Y1B9, Q945N7, Q9LZ83
      Conserved Domains (4) summary
      PLN02193
      Location:147 → 336
      PLN02193; nitrile-specifier protein
      COG1196
      Location:395 → 503
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      sd00038
      Location:35 → 128
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:34 → 75
      Kelch_1; Kelch motif

    2. NM_001036756.2 → NP_001031833.1  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031833.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US13, A0A5S9Y1B9, Q945N7, Q9LZ83
      Conserved Domains (4) summary
      PLN02193
      Location:147 → 336
      PLN02193; nitrile-specifier protein
      COG1196
      Location:395 → 503
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      sd00038
      Location:35 → 128
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:34 → 75
      Kelch_1; Kelch motif

    3. NM_001036755.2 → NP_001031832.1  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031832.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US13, A0A5S9Y1B9, Q945N7, Q9LZ83
      Conserved Domains (4) summary
      PLN02193
      Location:147 → 336
      PLN02193; nitrile-specifier protein
      COG1196
      Location:395 → 503
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      sd00038
      Location:35 → 128
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:34 → 75
      Kelch_1; Kelch motif
    Nucleotide Protein
    Heading Accession and Version

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