AT4G11680 Zinc finger, C3HC4 type (RING finger) family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: AT4G11680
Gene description: Zinc finger, C3HC4 type (RING finger) family protein
Primary source: Araport:AT4G11680
Locus tag: AT4G11680
See related: TAIR:AT4G11680
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T5C23.110; T5C23_110
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Genomic context

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See AT4G11680 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 5

Sequence:: Chromosome: 4; NC_003075.7 (7053437..7055740, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001340730.1

Supported by ESTs:

NM_117237.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Process	Evidence Code	Pubs
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info
located_in plant-type vacuole	HDA more info	PubMed

General protein information

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Preferred Names: Zinc finger, C3HC4 type (RING finger) family protein

NP_567379.1

Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

7053437..7055740 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_117237.5 → NP_567379.1 Zinc finger, C3HC4 type (RING finger) family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_567379.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q93Z92, Q9T0D5

UniProtKB/TrEMBL

A0A178UY99, A0A5S9XRE3

Conserved Domains (1) summary

cd16474
Location:337 → 381

RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins
NM_001340730.1 → NP_001329829.1 Zinc finger, C3HC4 type (RING finger) family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B8Y6, A0A5S9XRE3