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    AT3G56050 Protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824771, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G56050
    Gene description
    Protein kinase family protein
    Primary source
    Araport:AT3G56050
    Locus tag
    AT3G56050
    See related
    TAIR:AT3G56050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT3G56050 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (20797871..20801428, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene UDP-glucose pyrophosphorylase 3 Neighboring gene ncRNA Neighboring gene Glucose-methanol-choline (GMC) oxidoreductase family protein Neighboring gene rotamase cyclophilin 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084831.2
    NM_115463.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within phosphorylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Protein kinase family protein
    NP_001078300.1
    • Protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT2G40270.1); Has 41170 Blast hits to 40839 proteins in 1653 species: Archae - 20; Bacteria - 2328; Metazoa - 11695; Fungi - 793; Plants - 23080; Viruses - 152; Other Eukaryotes - 3102 (source: NCBI BLink).
    NP_191164.1
    • Protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT2G40270.1); Has 41170 Blast hits to 40839 proteins in 1653 species: Archae - 20; Bacteria - 2328; Metazoa - 11695; Fungi - 793; Plants - 23080; Viruses - 152; Other Eukaryotes - 3102 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20797871..20801428 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115463.4 → NP_191164.1  Protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191164.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LYN6
      UniProtKB/TrEMBL
      A0A178VCH2, A0A5S9XLC2
      Conserved Domains (2) summary
      PHA03247
      Location:79 → 123
      PHA03247; large tegument protein UL36; Provisional
      cl21453
      Location:214 → 473
      PKc_like; Protein Kinases, catalytic domain

    2. NM_001084831.2 → NP_001078300.1  Protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078300.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LYN6
      UniProtKB/TrEMBL
      A0A178VCH2, A0A5S9XLC2
      Conserved Domains (2) summary
      PHA03247
      Location:79 → 123
      PHA03247; large tegument protein UL36; Provisional
      cl21453
      Location:214 → 473
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYN6.1

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