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    SKIP5 SKP1/ASK-interacting protein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824613, updated on 15-Feb-2024

    Summary

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    Gene symbol
    SKIP5
    Gene description
    SKP1/ASK-interacting protein 5
    Primary source
    Araport:AT3G54480
    Locus tag
    AT3G54480
    See related
    TAIR:AT3G54480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SKP1/ASK-interacting protein 5; SKP5
    Summary
    Encodes an SKP1 interacting partner (SKIP5).
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    Genomic context

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    See SKIP5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (20170654..20173530, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Major facilitator superfamily protein Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein Neighboring gene uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) Neighboring gene ncRNA Neighboring gene RNA polymerase II fifth largest subunit, E Neighboring gene agglutinin-like protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase. Farrás R, et al. EMBO J, 2001 Jun 1. PMID 11387208, Free PMC Article
    2. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001339667.1
    NM_001339668.1
    NM_001339669.1
    NM_001339670.1
    NM_001339671.1
    NM_115304.3
    NM_115305.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SKP1/ASK-interacting protein 5
    NP_566999.1
    • SKP1/ASK-interacting protein 5 (SKIP5); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 46 Blast hits to 46 proteins in 18 species: Archae - 2; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_567000.2
    • SKP1/ASK-interacting protein 5 (SKIP5); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 36 Blast hits to 36 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20170654..20173530 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115304.3 → NP_566999.1  SKP1/ASK-interacting protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566999.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LNL9, Q3E7R9, Q94FT2, Q9FPG4, Q9FV00, Q9FYV5, Q9M1H9
      UniProtKB/TrEMBL
      A0A5S9XKR7, A0A654FFS6
      Conserved Domains (1) summary
      pfam12937
      Location:43 → 80
      F-box-like

    2. NM_001339667.1 → NP_001326219.1  SKP1/ASK-interacting protein 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94FT2

    3. NM_001339669.1 → NP_001326222.1  SKP1/ASK-interacting protein 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LNL9, Q3E7R9, Q94FT2, Q9FPG4, Q9FV00, Q9FYV5, Q9M1H9
      UniProtKB/TrEMBL
      A0A5S9XKR7, A0A654FFS6
      Conserved Domains (1) summary
      pfam12937
      Location:43 → 80
      F-box-like

    4. NM_001339668.1 → NP_001326223.1  SKP1/ASK-interacting protein 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94FT2

    5. NM_001339670.1 → NP_001326221.1  SKP1/ASK-interacting protein 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNL7

    6. NM_115305.5 → NP_567000.2  SKP1/ASK-interacting protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567000.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JCX6
      Conserved Domains (2) summary
      pfam12937
      Location:43 → 81
      F-box-like; F-box-like
      cl21453
      Location:8 → 98
      PKc_like; Protein Kinases, catalytic domain

    7. NM_001339671.1 → NP_001326220.1  SKP1/ASK-interacting protein 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V842, A0A1I9LNL6, A0A384LMR3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94FT2.1

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