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    AT3G09480 Histone superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820105, updated on 15-Oct-2023

    Summary

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    Gene symbol
    AT3G09480
    Gene description
    Histone superfamily protein
    Primary source
    Araport:AT3G09480
    Locus tag
    AT3G09480
    See related
    TAIR:AT3G09480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT3G09480 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (2914701..2915442, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit Neighboring gene Major facilitator superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Ribosomal L29 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111782.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Histone superfamily protein
    NP_187559.1
    • Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G02570.1); Has 3226 Blast hits to 3226 proteins in 338 species: Archae - 0; Bacteria - 0; Metazoa - 2242; Fungi - 198; Plants - 460; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2914701..2915442 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111782.3 → NP_187559.1  Histone superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187559.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SF55
      UniProtKB/TrEMBL
      A0A178V4X7, A0A5S9XAF5
      Conserved Domains (1) summary
      cl23830
      Location:1 → 126
      H2B; Histone H2B
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SF55.3

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