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    NHL12 NDR1/HIN1-like 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818169, updated on 15-Feb-2024

    Summary

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    Gene symbol
    NHL12
    Gene description
    NDR1/HIN1-like 12
    Primary source
    Araport:AT2G35960
    Locus tag
    AT2G35960
    See related
    TAIR:AT2G35960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11F19.13; F11F19_13; NDR1/HIN1-like 12
    Summary
    Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.
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    Genomic context

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    See NHL12 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (15106940..15108086)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene BEL1-like homeodomain 1 Neighboring gene ncRNA Neighboring gene embryo sac development arrest 12 Neighboring gene uncharacterized protein Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_129155.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    NDR1/HIN1-like 12
    NP_181140.1
    • NDR1/HIN1-like 12 (NHL12); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G52470.1); Has 889 Blast hits to 889 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 889; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15106940..15108086
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129155.5 → NP_181140.1  NDR1/HIN1-like 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181140.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SJ54
      UniProtKB/TrEMBL
      A0A178VSQ7, A0A5S9X4B5, A0A654EZB1
      Conserved Domains (1) summary
      pfam03168
      Location:75 → 179
      LEA_2; Late embryogenesis abundant protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJ54.1

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