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    AT5G19473 RPM1-interacting protein 4 (RIN4) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 3770676, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT5G19473
    Gene description
    RPM1-interacting protein 4 (RIN4) family protein
    Primary source
    Araport:AT5G19473
    Locus tag
    AT5G19473
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT5G19473 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (6569162..6570956)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nudix hydrolase homolog 20 Neighboring gene nudix hydrolase homolog 24 Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene transferases/nucleotidyltransferase Neighboring gene Histone superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036829.3
    NM_001343606.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RPM1-interacting protein 4 (RIN4) family protein
    NP_001031906.1
    • RPM1-interacting protein 4 (RIN4) family protein; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09960.1); Has 77 Blast hits to 77 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6569162..6570956
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036829.3 → NP_001031906.1  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031906.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8M8, A0A5S9Y5K9, F4K158
      Conserved Domains (1) summary
      pfam05627
      Location:11 → 42
      AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr

    2. NM_001343606.1 → NP_001332461.1  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGZ5
    Nucleotide Protein
    Heading Accession and Version

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