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    LOC101221570 kinetochore protein NDC80 homolog [ Cucumis sativus (cucumber) ]

    Gene ID: 101221570, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101221570
    Gene description
    kinetochore protein NDC80 homolog
    Locus tag
    Csa_009662
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101221570 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (14510379..14517676, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (14280995..14285602, complement)

    Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene cytochrome b-c1 complex subunit 6 Neighboring gene WRKY transcription factor Neighboring gene proline--tRNA ligase, chloroplastic/mitochondrial Neighboring gene probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial Neighboring gene uncharacterized LOC101218253

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in attachment of mitotic spindle microtubules to kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ndc80 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kinetochore protein NDC80 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      14510379..14517676 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004149923.3 → XP_004149971.2  kinetochore protein NDC80 homolog isoform X1

      Conserved Domains (2) summary
      COG5185
      Location:109 → 549
      HEC1; Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning]
      pfam03801
      Location:23 → 163
      Ndc80_HEC; HEC/Ndc80p family

    2. XM_031883172.1 → XP_031739032.1  kinetochore protein NDC80 homolog isoform X2

      Conserved Domains (1) summary
      COG5185
      Location:1 → 367
      HEC1; Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein
    Heading Accession and Version

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