"human"[ORGN] and FOS - SNP

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Select item 46458571.

rs4645857 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:75281262 (GRCh38)
14:75747965 (GRCh37)
Canonical SPDI:: NC_000014.9:75281261:G:A
Gene:: FOS (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000227/11 (ALFA)
A=0.000071/10 (GnomAD)
A=0.000077/1 (GoESP)
A=0.000151/40 (TOPMED)
A=0.000259/1 (ALSPAC)
A=0.00027/1 (TWINSUK)
A=0.001116/5 (Estonian)
A=0.00348/867 (GnomAD_exomes)
A=0.004085/493 (ExAC)
A=0.00463/1 (Qatari)
A=0.006402/32 (1000Genomes)
A=0.022059/6 (HapMap)
G=0.5/3 (SGDP_PRJ)
HGVS:: NC_000014.9:g.75281262G>A, NC_000014.8:g.75747965G>A, NG_029673.1:g.7485G>A, NM_005252.4:c.981G>A, NM_005252.3:c.981G>A

Select item 758980852.

rs75898085 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 14:75281079 (GRCh38)
14:75747782 (GRCh37)
Canonical SPDI:: NC_000014.9:75281078:C:G,NC_000014.9:75281078:C:T
Gene:: FOS (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000073/2 (ALFA)
T=0.000154/2 (GoESP)
T=0.000223/1 (Estonian)
T=0.000342/48 (GnomAD)
T=0.001562/8 (1000Genomes)
T=0.008493/142 (TOMMO)
T=0.012663/37 (KOREAN)
T=0.021242/13 (Vietnamese)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000014.9:g.75281079C>G, NC_000014.9:g.75281079C>T, NC_000014.8:g.75747782C>G, NC_000014.8:g.75747782C>T, NG_029673.1:g.7302C>G, NG_029673.1:g.7302C>T, NM_005252.4:c.798C>G, NM_005252.4:c.798C>T, NM_005252.3:c.798C>G, NM_005252.3:c.798C>T

Select item 761956343.

rs76195634 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:75279924 (GRCh38)
14:75746627 (GRCh37)
Canonical SPDI:: NC_000014.9:75279923:G:A
Gene:: FOS (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.009452/562 (ALFA)
A=0.001002/1 (GoNL)
A=0.001873/1 (MGP)
A=0.00463/1 (Qatari)
A=0.00567/1421 (GnomAD_exomes)
A=0.007111/856 (ExAC)
A=0.022709/3183 (GnomAD)
A=0.023758/309 (GoESP)
A=0.024277/6426 (TOPMED)
A=0.026077/131 (1000Genomes)
A=0.035976/2831 (PAGE_STUDY)
G=0.5/6 (SGDP_PRJ)
HGVS:: NC_000014.9:g.75279924G>A, NC_000014.8:g.75746627G>A, NG_029673.1:g.6147G>A, NM_005252.4:c.189G>A, NM_005252.3:c.189G>A

Select item 1383344294.

rs138334429 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 14:75280809 (GRCh38)
14:75747512 (GRCh37)
Canonical SPDI:: NC_000014.9:75280808:G:A,NC_000014.9:75280808:G:C
Gene:: FOS (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,synonymous_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.001159/223 (ALFA)
A=0./0 (PAGE_STUDY)
C=0.002811/14 (1000Genomes)
C=0.003355/888 (TOPMED)
C=0.003745/2 (MGP)
C=0.004241/19 (Estonian)
C=0.004538/59 (GoESP)
C=0.004597/554 (ExAC)
C=0.004677/1173 (GnomAD_exomes)
C=0.005007/702 (GnomAD)
C=0.00501/5 (GoNL)
C=0.005189/20 (ALSPAC)
C=0.006472/24 (TWINSUK)
C=0.013333/8 (NorthernSweden)
C=0.019737/6 (FINRISK)
G=0.5/1 (SGDP_PRJ)
G=0.5/1 (Siberian)
HGVS:: NC_000014.9:g.75280809G>A, NC_000014.9:g.75280809G>C, NC_000014.8:g.75747512G>A, NC_000014.8:g.75747512G>C, NG_029673.1:g.7032G>A, NG_029673.1:g.7032G>C, NM_005252.4:c.528G>A, NM_005252.4:c.528G>C, NM_005252.3:c.528G>A, NM_005252.3:c.528G>C, NP_005243.1:p.Lys176Asn

Select item 1438160085.

rs143816008 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 14:75280978 (GRCh38)
14:75747681 (GRCh37)
Canonical SPDI:: NC_000014.9:75280977:C:G
Gene:: FOS (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Clinical significance:: likely-benign
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000164/18 (ALFA)
G=0.000266/67 (GnomAD_exomes)
G=0.000322/39 (ExAC)
G=0.000625/3 (1000Genomes)
G=0.000927/130 (GnomAD)
G=0.001/13 (GoESP)
G=0.001115/295 (TOPMED)
G=0.001817/143 (PAGE_STUDY)
HGVS:: NC_000014.9:g.75280978C>G, NC_000014.8:g.75747681C>G, NG_029673.1:g.7201C>G, NM_005252.4:c.697C>G, NM_005252.3:c.697C>G, NP_005243.1:p.Pro233Ala

Select item 1478084376.

rs147808437 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:75280562 (GRCh38)
14:75747265 (GRCh37)
Canonical SPDI:: NC_000014.9:75280561:A:G
Gene:: FOS (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Clinical significance:: likely-benign
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000023/6 (TOPMED)
G=0.000028/7 (GnomAD_exomes)
G=0.000046/5 (ExAC)
G=0.000154/2 (GoESP)
HGVS:: NC_000014.9:g.75280562A>G, NC_000014.8:g.75747265A>G, NG_029673.1:g.6785A>G, NM_005252.4:c.396A>G, NM_005252.3:c.396A>G

Select item 1491023137.

rs149102313 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:75280980 (GRCh38)
14:75747683 (GRCh37)
Canonical SPDI:: NC_000014.9:75280979:G:A
Gene:: FOS (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Clinical significance:: likely-benign
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000603/27 (ALFA)
A=0.000259/1 (ALSPAC)
A=0.000539/2 (TWINSUK)
A=0.000553/139 (GnomAD_exomes)
A=0.000615/8 (GoESP)
A=0.000638/169 (TOPMED)
A=0.000643/78 (ExAC)
A=0.000699/98 (GnomAD)
A=0.001093/5 (1000Genomes)
A=0.001667/1 (NorthernSweden)
A=0.001873/1 (MGP)
A=0.025/1 (GENOME_DK)
HGVS:: NC_000014.9:g.75280980G>A, NC_000014.8:g.75747683G>A, NG_029673.1:g.7203G>A, NM_005252.4:c.699G>A, NM_005252.3:c.699G>A

Select item 1504277948.

rs150427794 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:75280102 (GRCh38)
14:75746805 (GRCh37)
Canonical SPDI:: NC_000014.9:75280101:A:G
Gene:: FOS (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Clinical significance:: likely-benign
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00248/450 (ALFA)
G=0.000673/53 (PAGE_STUDY)
G=0.000781/4 (1000Genomes)
G=0.001476/207 (GnomAD)
G=0.001523/403 (TOPMED)
G=0.001692/22 (GoESP)
G=0.001742/434 (GnomAD_exomes)
G=0.001861/221 (ExAC)
G=0.002004/2 (GoNL)
G=0.002427/9 (TWINSUK)
G=0.003114/12 (ALSPAC)
G=0.003125/14 (Estonian)
G=0.003745/2 (MGP)
HGVS:: NC_000014.9:g.75280102A>G, NC_000014.8:g.75746805A>G, NG_029673.1:g.6325A>G, NM_005252.4:c.367A>G, NM_005252.3:c.367A>G, NP_005243.1:p.Ile123Val

Select item 10240538029.

rs1024053802 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 14:75280647 (GRCh38)
14:75747350 (GRCh37)
Canonical SPDI:: NC_000014.9:75280646:C:G,NC_000014.9:75280646:C:T
Gene:: FOS (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant,missense_variant
Clinical significance:: likely-benign
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.75280647C>G, NC_000014.9:g.75280647C>T, NC_000014.8:g.75747350C>G, NC_000014.8:g.75747350C>T, NG_029673.1:g.6870C>G, NG_029673.1:g.6870C>T, NM_005252.4:c.481C>G, NM_005252.4:c.481C>T, NM_005252.3:c.481C>G, NM_005252.3:c.481C>T, NP_005243.1:p.Leu161Val

Select item 121199620210.

rs1211996202 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:75280643 (GRCh38)
14:75747346 (GRCh37)
Canonical SPDI:: NC_000014.9:75280642:G:A
Gene:: FOS (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Clinical significance:: likely-benign
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.75280643G>A, NC_000014.8:g.75747346G>A, NG_029673.1:g.6866G>A, NM_005252.4:c.477G>A, NM_005252.3:c.477G>A

Select item 135327808711.

rs1353278087 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 14:75279024 (GRCh38)
14:75745727 (GRCh37)
Canonical SPDI:: NC_000014.9:75279023:C:A,NC_000014.9:75279023:C:T
Gene:: FOS (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Clinical significance:: likely-benign
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000014.9:g.75279024C>A, NC_000014.9:g.75279024C>T, NC_000014.8:g.75745727C>A, NC_000014.8:g.75745727C>T, NG_029673.1:g.5247C>A, NG_029673.1:g.5247C>T, NM_005252.4:c.42C>A, NM_005252.4:c.42C>T, NM_005252.3:c.42C>A, NM_005252.3:c.42C>T

Select item 145344792812.

rs1453447928 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:75281193 (GRCh38)
14:75747896 (GRCh37)
Canonical SPDI:: NC_000014.9:75281192:G:A
Gene:: FOS (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Clinical significance:: likely-benign
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.75281193G>A, NC_000014.8:g.75747896G>A, NG_029673.1:g.7416G>A, NM_005252.4:c.912G>A, NM_005252.3:c.912G>A

Select item 38659419913.

rs386594199 has merged into rs4645857 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:75281262 (GRCh38)
14:75747965 (GRCh37)
Canonical SPDI:: NC_000014.9:75281261:G:A
Gene:: FOS (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000227/11 (ALFA)
A=0.000071/10 (GnomAD)
A=0.000077/1 (GoESP)
A=0.000151/40 (TOPMED)
A=0.000259/1 (ALSPAC)
A=0.00027/1 (TWINSUK)
A=0.001116/5 (Estonian)
A=0.00348/867 (GnomAD_exomes)
A=0.004085/493 (ExAC)
A=0.00463/1 (Qatari)
A=0.006402/32 (1000Genomes)
A=0.022059/6 (HapMap)
G=0.5/3 (SGDP_PRJ)
HGVS:: NC_000014.9:g.75281262G>A, NC_000014.8:g.75747965G>A, NG_029673.1:g.7485G>A, NM_005252.4:c.981G>A, NM_005252.3:c.981G>A

Select item 710114.

rs7101 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:75278923 (GRCh38)
14:75745626 (GRCh37)
Canonical SPDI:: NC_000014.9:75278922:C:T
Gene:: FOS (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.261867/50676 (ALFA)
C=0.163265/16 (PRJEB36033)
C=0.2/8 (GENOME_DK)
C=0.202455/907 (Estonian)
C=0.22299/31253 (GnomAD)
C=0.236632/62634 (TOPMED)
C=0.242/121 (SGDP_PRJ)
C=0.257395/992 (ALSPAC)
C=0.26087/12 (Siberian)
C=0.264831/500 (HapMap)
C=0.273193/1013 (TWINSUK)
C=0.284666/1426 (1000Genomes)
C=0.287037/62 (Qatari)
C=0.315865/657 (HGDP_Stanford)
C=0.32/192 (NorthernSweden)
C=0.443306/1298 (KOREAN)
T=0.464531/7783 (TOMMO)
C=0.469072/364 (PRJEB37584)
C=0.474888/851 (Korea1K)
C=0.481308/103 (Vietnamese)
T=0.492509/263 (MGP)
HGVS:: NC_000014.9:g.75278923C>T, NC_000014.8:g.75745626C>T, NG_029673.1:g.5146C>T, NM_005252.4:c.-60C>T, NM_005252.3:c.-60C>T

PubMed LitVar

Select item 1437115.

rs14371 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:75282090 (GRCh38)
14:75748793 (GRCh37)
Canonical SPDI:: NC_000014.9:75282089:T:C
Gene:: FOS (Varview)
Functional Consequence:: 3_prime_UTR_variant
HGVS:: NC_000014.9:g.75282090T>C, NC_000014.8:g.75748793T>C, NG_029673.1:g.8313T>C, NM_005252.4:c.*666T>C, NM_005252.3:c.*666T>C

Select item 93225716.

rs932257 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 14:75277601 (GRCh38)
14:75744304 (GRCh37)
Canonical SPDI:: NC_000014.9:75277600:T:G
Gene:: FOS (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.219614/4799 (ALFA)
T=0.2/8 (GENOME_DK)
T=0.20067/899 (Estonian)
T=0.217027/30412 (GnomAD)
T=0.229412/117 (SGDP_PRJ)
T=0.230594/61036 (TOPMED)
T=0.25463/55 (Qatari)
T=0.256617/989 (ALSPAC)
T=0.258493/487 (HapMap)
T=0.26087/12 (Siberian)
T=0.272923/1012 (TWINSUK)
T=0.280918/1407 (1000Genomes)
T=0.32/192 (NorthernSweden)
T=0.442321/1296 (KOREAN)
T=0.462617/99 (Vietnamese)
G=0.464288/7781 (TOMMO)
T=0.477074/874 (Korea1K)
HGVS:: NC_000014.9:g.75277601T>G, NC_000014.8:g.75744304T>G, NG_029673.1:g.3824T>G

Select item 104611717.

rs1046117 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:75279987 (GRCh38)
14:75746690 (GRCh37)
Canonical SPDI:: NC_000014.9:75279986:C:T
Gene:: FOS (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.259032/12776 (ALFA)
C=0.162791/14 (PRJEB36033)
C=0.213616/957 (Estonian)
C=0.219437/2854 (GoESP)
C=0.223684/68 (FINRISK)
C=0.229854/32209 (GnomAD)
C=0.240617/63689 (TOPMED)
C=0.240964/120 (SGDP_PRJ)
C=0.25/10 (GENOME_DK)
C=0.26087/12 (Siberian)
C=0.263622/1016 (ALSPAC)
C=0.275081/1020 (TWINSUK)
C=0.287945/1442 (1000Genomes)
C=0.291667/63 (Qatari)
C=0.294627/35740 (ExAC)
C=0.29679/74566 (GnomAD_exomes)
C=0.323333/194 (NorthernSweden)
C=0.44528/1302 (KOREAN)
C=0.452145/274 (Vietnamese)
T=0.462453/7751 (TOMMO)
C=0.475983/872 (Korea1K)
C=0.496255/265 (MGP)
HGVS:: NC_000014.9:g.75279987C>T, NC_000014.8:g.75746690C>T, NG_029673.1:g.6210C>T, NM_005252.4:c.252C>T, NM_005252.3:c.252C>T

PubMed

Select item 104628318.

rs1046283 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 14:75281565 (GRCh38)
14:75748268 (GRCh37)
Canonical SPDI:: NC_000014.9:75281564:C:G
Gene:: FOS (Varview)
Functional Consequence:: 3_prime_UTR_variant
HGVS:: NC_000014.9:g.75281565C>G, NC_000014.8:g.75748268C>G, NG_029673.1:g.7788C>G, NM_005252.4:c.*141C>G, NM_005252.3:c.*141C>G

Select item 106316919.

rs1063169 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 14:75280415 (GRCh38)
14:75747118 (GRCh37)
Canonical SPDI:: NC_000014.9:75280414:G:C,NC_000014.9:75280414:G:T
Gene:: FOS (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.154037/47309 (ALFA)
T=0.037037/8 (Qatari)
T=0.075/3 (GENOME_DK)
T=0.091504/7201 (PAGE_STUDY)
T=0.10912/28883 (TOPMED)
T=0.109307/547 (1000Genomes)
T=0.116623/16344 (GnomAD)
T=0.121099/194 (HapMap)
T=0.140449/75 (MGP)
T=0.146353/305 (HGDP_Stanford)
T=0.166936/619 (TWINSUK)
T=0.167878/647 (ALSPAC)
T=0.168337/168 (GoNL)
T=0.180134/807 (Estonian)
T=0.183333/110 (NorthernSweden)
T=0.217391/10 (PRJEB36033)
T=0.228972/49 (Vietnamese)
T=0.255155/198 (PRJEB37584)
T=0.258188/473 (Korea1K)
T=0.258362/757 (KOREAN)
T=0.260634/4368 (TOMMO)
G=0.428571/6 (Siberian)
G=0.43125/69 (SGDP_PRJ)
HGVS:: NC_000014.9:g.75280415G>C, NC_000014.9:g.75280415G>T, NC_000014.8:g.75747118G>C, NC_000014.8:g.75747118G>T, NG_029673.1:g.6638G>C, NG_029673.1:g.6638G>T

PubMed LitVar

Select item 222902420.

rs2229024 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 14:75281127 (GRCh38)
14:75747830 (GRCh37)
Canonical SPDI:: NC_000014.9:75281126:C:A,NC_000014.9:75281126:C:G,NC_000014.9:75281126:C:T
Gene:: FOS (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0./0 (HapMap)
G=0.000259/1 (ALSPAC)
G=0.00027/1 (TWINSUK)
G=0.001002/1 (GoNL)
G=0.003745/2 (MGP)
G=0.032407/7 (Qatari)
G=0.046517/605 (GoESP)
G=0.046881/12409 (TOPMED)
G=0.051374/257 (1000Genomes)
C=0.416667/5 (SGDP_PRJ)
HGVS:: NC_000014.9:g.75281127C>A, NC_000014.9:g.75281127C>G, NC_000014.9:g.75281127C>T, NC_000014.8:g.75747830C>A, NC_000014.8:g.75747830C>G, NC_000014.8:g.75747830C>T, NG_029673.1:g.7350C>A, NG_029673.1:g.7350C>G, NG_029673.1:g.7350C>T, NM_005252.4:c.846C>A, NM_005252.4:c.846C>G, NM_005252.4:c.846C>T, NM_005252.3:c.846C>A, NM_005252.3:c.846C>G, NM_005252.3:c.846C>T

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