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    ccdc80l2 coiled-coil domain containing 80 like 2 [ Danio rerio (zebrafish) ]

    Gene ID: 796417, updated on 25-Apr-2024

    Summary

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    Official Symbol
    ccdc80l2provided by ZNC
    Official Full Name
    coiled-coil domain containing 80 like 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091118-63
    See related
    Ensembl:ENSDARG00000044695 AllianceGenome:ZFIN:ZDB-GENE-091118-63
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb92b05; wu:fb92b05; si:ch211-147j13.2
    Summary
    Orthologous to human CCDC80 (coiled-coil domain containing 80). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See ccdc80l2 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (19834027..19842105)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (19797417..19805471)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene si:ch211-262i10.2 Neighboring gene fibroblast growth factor 10a Neighboring gene nicotinamide nucleotide transhydrogenase Neighboring gene FYN binding protein 1 b Neighboring gene multifunctional ROCO family signaling regulator 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Ccdc80-l1 Is involved in axon pathfinding of zebrafish motoneurons. Brusegan C, et al. PLoS One, 2012. PMID 22384085, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in extracellular matrix organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of cell-substrate adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in basement membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 80

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      19834027..19842105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001336711.7 → XP_001336747.1  coiled-coil domain-containing protein 80

      UniProtKB/TrEMBL
      A0A8M1PS53, E9QF62
      Related
      ENSDARP00000116868.1, ENSDART00000147555.2
      Conserved Domains (1) summary
      pfam13778
      Location:52 → 180
      DUF4174; Domain of unknown function (DUF4174)
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials