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    h1l1 H1 linker histone-like 1 [ Danio rerio (zebrafish) ]

    Gene ID: 565341, updated on 11-Apr-2024

    Summary

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    Official Symbol
    h1l1provided by ZNC
    Official Full Name
    H1 linker histone-like 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-160113-58
    See related
    Ensembl:ENSDARG00000074012 AllianceGenome:ZFIN:ZDB-GENE-160113-58
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch1073-159d7.7
    Summary
    Predicted to enable DNA binding activity. Predicted to act upstream of or within nucleosome assembly. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See h1l1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (6447303..6448003, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (6311482..6312504, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene si:ch1073-159d7.5 Neighboring gene si:ch1073-159d7.11 Neighboring gene si:ch1073-159d7.6 Neighboring gene zgc:154164

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of Intracellular Peptides from Zebrafish (Danio rerio) Brain. Teixeira CMM, et al. Zebrafish, 2019 Jun. PMID 31017557
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    histone H1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      6447303..6448003 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_688618.7 → XP_693710.3  histone H1-like

      UniProtKB/TrEMBL
      A0A140LH34, A0A8N7TF89
      Related
      ENSDARP00000142564.1, ENSDART00000173045.2
      Conserved Domains (1) summary
      pfam00538
      Location:29 → 99
      Linker_histone; linker histone H1 and H5 family
    Nucleotide Protein Strain
    Heading Accession and Version

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