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    VPS11 VPS11 core subunit of CORVET and HOPS complexes [ Gallus gallus (chicken) ]

    Gene ID: 419702, updated on 3-Apr-2024

    Summary

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    Official Symbol
    VPS11provided by CGNC
    Official Full Name
    VPS11 core subunit of CORVET and HOPS complexesprovided by CGNC
    Primary source
    CGNC:175
    See related
    Ensembl:ENSGALG00010026433
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See VPS11 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 24 NC_052555.1 (101764..113850, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 24 NC_052596.1 (61580..73670, complement)

    Chromosome 24 - NC_052555.1Genomic Context describing neighboring genes Neighboring gene dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 Neighboring gene H2A.X variant histone Neighboring gene hydroxymethylbilane synthase Neighboring gene salt inducible kinase 2 Neighboring gene uncharacterized LOC121107537 Neighboring gene fasciculation and elongation protein zeta 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein-macromolecule adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in organelle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuole organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle docking involved in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HOPS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 11 homolog
    Names
    VPS11, CORVET/HOPS core subunit
    vacuolar protein sorting 11 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052555.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      101764..113850 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046903777.1 → XP_046759733.1  vacuolar protein sorting-associated protein 11 homolog isoform X1

    2. XM_040652261.2 → XP_040508195.1  vacuolar protein sorting-associated protein 11 homolog isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TTF9
      Conserved Domains (4) summary
      sd00039
      Location:143 → 181
      7WD40; WD40 repeat [structural motif]
      cd16688
      Location:819 → 862
      RING-H2_Vps11; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 11 homolog (Vps11) and similar proteins
      pfam00637
      Location:411 → 535
      Clathrin; Region in Clathrin and VPS
      pfam12451
      Location:863 → 906
      VPS11_C; Vacuolar protein sorting protein 11 C terminal

    3. XM_046903776.1 → XP_046759732.1  vacuolar protein sorting-associated protein 11 homolog isoform X1

    4. XM_040652262.2 → XP_040508196.1  vacuolar protein sorting-associated protein 11 homolog isoform X4

      UniProtKB/TrEMBL
      A0A3Q2TTF9
      Conserved Domains (2) summary
      sd00039
      Location:143 → 181
      7WD40; WD40 repeat [structural motif]
      cd16688
      Location:756 → 799
      RING-H2_Vps11; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 11 homolog (Vps11) and similar proteins

    5. XM_046903779.1 → XP_046759735.1  vacuolar protein sorting-associated protein 11 homolog isoform X3

    6. XM_046903780.1 → XP_046759736.1  vacuolar protein sorting-associated protein 11 homolog isoform X5

    7. XM_046903778.1 → XP_046759734.1  vacuolar protein sorting-associated protein 11 homolog isoform X2

      Related
      ENSGALP00010039489.1, ENSGALT00010064283.1

    8. XM_040652263.2 → XP_040508197.1  vacuolar protein sorting-associated protein 11 homolog isoform X6

      UniProtKB/TrEMBL
      A0A8V1AB61
      Conserved Domains (2) summary
      sd00039
      Location:143 → 181
      7WD40; WD40 repeat [structural motif]
      cl26078
      Location:411 → 534
      Clathrin; Region in Clathrin and VPS

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052596.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      61580..73670 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046932405.1 → XP_046788361.1  vacuolar protein sorting-associated protein 11 homolog isoform X1

    2. XM_040690586.2 → XP_040546520.1  vacuolar protein sorting-associated protein 11 homolog isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TTF9
      Conserved Domains (4) summary
      sd00039
      Location:143 → 181
      7WD40; WD40 repeat [structural motif]
      cd16688
      Location:819 → 862
      RING-H2_Vps11; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 11 homolog (Vps11) and similar proteins
      pfam00637
      Location:411 → 535
      Clathrin; Region in Clathrin and VPS
      pfam12451
      Location:863 → 906
      VPS11_C; Vacuolar protein sorting protein 11 C terminal

    3. XM_046932404.1 → XP_046788360.1  vacuolar protein sorting-associated protein 11 homolog isoform X1

    4. XM_040690587.2 → XP_040546521.1  vacuolar protein sorting-associated protein 11 homolog isoform X4

      UniProtKB/TrEMBL
      A0A3Q2TTF9
      Conserved Domains (2) summary
      sd00039
      Location:143 → 181
      7WD40; WD40 repeat [structural motif]
      cd16688
      Location:756 → 799
      RING-H2_Vps11; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 11 homolog (Vps11) and similar proteins

    5. XM_046932407.1 → XP_046788363.1  vacuolar protein sorting-associated protein 11 homolog isoform X3

    6. XM_046932408.1 → XP_046788364.1  vacuolar protein sorting-associated protein 11 homolog isoform X5

    7. XM_046932406.1 → XP_046788362.1  vacuolar protein sorting-associated protein 11 homolog isoform X2

    8. XM_040690588.2 → XP_040546522.1  vacuolar protein sorting-associated protein 11 homolog isoform X6

      UniProtKB/TrEMBL
      A0A8V1AB61
      Conserved Domains (2) summary
      sd00039
      Location:143 → 181
      7WD40; WD40 repeat [structural motif]
      cl26078
      Location:411 → 534
      Clathrin; Region in Clathrin and VPS
    Nucleotide Protein
    Heading Accession and Version

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