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    CSF2RA colony stimulating factor 2 receptor alpha subunit [ Gallus gallus (chicken) ]

    Gene ID: 418666, updated on 19-Sep-2023

    Summary

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    Gene symbol
    CSF2RA
    Gene description
    colony stimulating factor 2 receptor alpha subunit
    See related
    Ensembl:ENSGALG00010001831
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
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    Genomic context

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    See CSF2RA in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (129290623..129306633, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (129244547..129260555, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene acetylserotonin O-methyltransferase like Neighboring gene granulocyte-macrophage colony-stimulating factor receptor subunit alpha-like Neighboring gene solute carrier family 25 member 6 Neighboring gene granulocyte-macrophage colony-stimulating factor receptor subunit alpha-like Neighboring gene uncharacterized LOC101749641 Neighboring gene uncharacterized LOC121109390

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
    2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cytokine receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokine-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    granulocyte-macrophage colony-stimulating factor receptor subunit alpha-like
    Names
    colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001312662.2 → NP_001299591.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha-like precursor

      Status: VALIDATED

      Source sequence(s)
      BU363451, BX266205, CB016809, HAEK01039322, HAEK01093772
      UniProtKB/TrEMBL
      F1NFE8
      Conserved Domains (3) summary
      cd00063
      Location:219 → 314
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam18611
      Location:35 → 98
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:123 → 214
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      129290623..129306633 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040698994.2 → XP_040554928.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha-like isoform X1

      UniProtKB/TrEMBL
      F1NFE8
      Related
      ENSGALP00010002466.1, ENSGALT00010004169.1
      Conserved Domains (3) summary
      cd00063
      Location:219 → 314
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam18611
      Location:35 → 98
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:123 → 214
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    2. XM_046940855.1 → XP_046796811.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha-like isoform X1

      UniProtKB/TrEMBL
      F1NFE8

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      129244547..129260555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046908032.1 → XP_046763988.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha-like isoform X1

      UniProtKB/TrEMBL
      F1NFE8

    2. XM_046908033.1 → XP_046763989.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha-like isoform X1

      UniProtKB/TrEMBL
      F1NFE8
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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