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    si:dkeyp-113d7.1 si:dkeyp-113d7.1 [ Danio rerio (zebrafish) ]

    Gene ID: 407709, updated on 11-Apr-2024

    Summary

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    Official Symbol
    si:dkeyp-113d7.1provided by ZNC
    Official Full Name
    si:dkeyp-113d7.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-755
    See related
    Ensembl:ENSDARG00000059109 AllianceGenome:ZFIN:ZDB-GENE-030131-755
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb44h04; wu:fb44h04; hm:zehn1068
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See si:dkeyp-113d7.1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (5315992..5320330)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (5399389..5403844)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene perforin 1.3 Neighboring gene si:dkeyp-113d7.10 Neighboring gene keratin, type 1, gene 19d Neighboring gene keratin, type 1, 19e

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Identification, characterization, and mapping of expressed sequence tags from an embryonic zebrafish heart cDNA library. Ton C, et al. Genome Res, 2000 Dec. PMID 11116087, Free PMC Article
    2. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
    3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC407709; zinc finger domain containing

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214794.3 → NP_999959.1  uncharacterized protein LOC407709

      See identical proteins and their annotated locations for NP_999959.1

      Status: PREDICTED

      Source sequence(s)
      AY571341
      UniProtKB/TrEMBL
      Q6PY44
      Related
      ENSDARP00000076570.3, ENSDART00000082133.5
      Conserved Domains (3) summary
      COG5048
      Location:260 → 414
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:264 → 284
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:276 → 299
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      5315992..5320330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159346.4 → XP_005159403.1  zinc finger domain containing isoform X1

      See identical proteins and their annotated locations for XP_005159403.1

      UniProtKB/TrEMBL
      B3DIL7, Q1LXK1
      Related
      ENSDARP00000121117.1, ENSDART00000145749.2
      Conserved Domains (3) summary
      COG5048
      Location:260 → 414
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:264 → 284
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:276 → 299
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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    Research Materials