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    ranbp3a RAN binding protein 3a [ Danio rerio (zebrafish) ]

    Gene ID: 394115, updated on 27-Mar-2024

    Summary

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    Official Symbol
    ranbp3aprovided by ZNC
    Official Full Name
    RAN binding protein 3aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1132
    See related
    Ensembl:ENSDARG00000008727 AllianceGenome:ZFIN:ZDB-GENE-040426-1132
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ranbp3; zgc:63485
    Summary
    Predicted to contribute to GTPase activator activity. Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within intracellular transport. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Orthologous to several human genes including RANBP3 (RAN binding protein 3). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See ranbp3a in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (6295347..6319312)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (6298115..6319463)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene chemokine (C-C motif) ligand 25b Neighboring gene cystinosin, lysosomal cystine transporter Neighboring gene neurturin Neighboring gene vimentin-type intermediate filament-associated coiled-coil protein-like Neighboring gene NADH:ubiquinone oxidoreductase subunit A11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC63485

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    contributes_to GTPase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within intracellular transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ran-binding protein 3; ran-binding protein 3a
    Names
    RAN binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_201140.2 → NP_957434.2  ran-binding protein 3a

      Status: VALIDATED

      Source sequence(s)
      AL840638
      UniProtKB/TrEMBL
      A0A8M1PIV2, F1Q591
      Related
      ENSDARP00000123447.1, ENSDART00000139882.3
      Conserved Domains (1) summary
      cd13180
      Location:340 → 455
      RanBD_RanBP3; Ran-binding protein 3 Ran-binding domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      6295347..6319312
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021479570.1 → XP_021335245.1  ran-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QLI8
      Conserved Domains (1) summary
      cd13180
      Location:342 → 457
      RanBD_RanBP3; Ran-binding protein 3 Ran-binding domain
    Nucleotide Protein Strain
    Heading Accession and Version

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