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    palm1b paralemmin 1b [ Danio rerio (zebrafish) ]

    Gene ID: 393573, updated on 25-Apr-2024

    Summary

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    Official Symbol
    palm1bprovided by ZNC
    Official Full Name
    paralemmin 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1147
    See related
    Ensembl:ENSDARG00000007818 AllianceGenome:ZFIN:ZDB-GENE-040426-1147
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:63523
    Summary
    Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Is expressed in several structures, including cardiovascular system; nervous system; neural rod; trigeminal placode; and yolk syncytial layer. Orthologous to human PALM (paralemmin). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See palm1b in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (26237322..26284242)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (26581688..26628608)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, N-methyl-D-aspartate 3Ba Neighboring gene phospholipid phosphatase related 3a Neighboring gene polypyrimidine tract binding protein 1a Neighboring gene ephrin-A2a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. hnRNP I is required to generate the Ca2+ signal that causes egg activation in zebrafish. Mei W, et al. Development, 2009 Sep. PMID 19666827, Free PMC Article
    2. Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons. Aoki M, et al. Biochem Biophys Res Commun, 2014 Mar 7. PMID 24513284
    3. An in silico mining for simple sequence repeats from expressed sequence tags of zebrafish, medaka, Fundulus, and Xiphophorus. Ju Z, et al. In Silico Biol, 2005. PMID 16268789
    4. Evolution of the vertebrate paralemmin gene family: ancient origin of gene duplicates suggests distinct functions. Hultqvist G, et al. PLoS One, 2012. PMID 22855693, Free PMC Article
    5. Stable isotope labeling in zebrafish allows in vivo monitoring of cardiac morphogenesis. Konzer A, et al. Mol Cell Proteomics, 2013 Jun. PMID 23412571, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC63523

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in apicolateral plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in basolateral plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in dendrite IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in filopodium membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in lateral plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    paralemmin 1b; uncharacterized protein LOC393573

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200601.1 → NP_956895.1  paralemmin 1b

      See identical proteins and their annotated locations for NP_956895.1

      Status: PROVISIONAL

      Source sequence(s)
      BC056777
      UniProtKB/TrEMBL
      Q6PGZ2
      Related
      ENSDARP00000031322.6, ENSDART00000030520.8
      Conserved Domains (1) summary
      pfam03285
      Location:64 → 244
      Paralemmin; Paralemmin

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      26237322..26284242
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005163394.4 → XP_005163451.1  uncharacterized protein LOC393573 isoform X1

      UniProtKB/TrEMBL
      A0A2R8RTM3, A0A8M2BAU0
      Related
      ENSDARP00000152546.1, ENSDART00000191006.1
      Conserved Domains (1) summary
      pfam03285
      Location:64 → 245
      Paralemmin; Paralemmin

    2. XM_005163395.4 → XP_005163452.1  uncharacterized protein LOC393573 isoform X2

      UniProtKB/TrEMBL
      A0A8M2BAG5, B0V0Y4
      Related
      ENSDARP00000108721.2, ENSDART00000129895.3
      Conserved Domains (1) summary
      pfam03285
      Location:64 → 244
      Paralemmin; Paralemmin
    Nucleotide Protein Strain
    Heading Accession and Version

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