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    si:ch211-166a6.5 si:ch211-166a6.5 [ Danio rerio (zebrafish) ]

    Gene ID: 100000230, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:ch211-166a6.5provided by ZNC
    Official Full Name
    si:ch211-166a6.5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-9913
    See related
    Ensembl:ENSDARG00000079745 AllianceGenome:ZFIN:ZDB-GENE-030131-9913
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb607; sb:cb607; wu:fa04c08; wu:fa12c01; wu:fb10h09; wu:fb52b01; si:dkey-285c2.5
    Summary
    Predicted to enable mRNA binding activity. Predicted to be involved in intracellular distribution of mitochondria. Predicted to be active in cytoplasm. Is expressed in EVL; epidermis; periderm; and pharynx. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See si:ch211-166a6.5 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (4445916..4514368, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (4389210..4457716, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene RAD9 checkpoint clamp component B Neighboring gene SRR1 domain containing Neighboring gene DEAH (Asp-Glu-Ala-His) box polypeptide 37 Neighboring gene glycoprotein Ib platelet subunit beta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Screen for genes differentially expressed during regeneration of the zebrafish caudal fin. Padhi BK, et al. Dev Dyn, 2004 Nov. PMID 15376328
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular distribution of mitochondria IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within organelle organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    clustered mitochondria protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      4445916..4514368 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478543.1 → XP_021334218.1  clustered mitochondria protein homolog

      UniProtKB/TrEMBL
      A0A8M9Q4D8
      Related
      ENSDARP00000122535.2, ENSDART00000141915.3
      Conserved Domains (5) summary
      pfam12807
      Location:842 → 1019
      eIF3_p135; Translation initiation factor eIF3 subunit 135
      pfam13236
      Location:481 → 701
      CLU; Clustered mitochondria
      pfam13374
      Location:1093 → 1131
      TPR_10; Tetratricopeptide repeat
      pfam13424
      Location:1173 → 1245
      TPR_12; Tetratricopeptide repeat
      pfam15044
      Location:224 → 265
      CLU_N; Mitochondrial function, CLU-N-term
    Nucleotide Protein Strain
    Heading Accession and Version

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