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    YOR338W uncharacterized protein [ Saccharomyces cerevisiae S288C ]

    Gene ID: 854516, updated on 25-Apr-2024

    Summary

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    Gene symbol
    YOR338W
    Gene description
    uncharacterized protein
    Primary source
    SGD:S000005865
    Locus tag
    YOR338W
    See related
    AllianceGenome:SGD:S000005865
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable chromatin binding activity and transcription coactivator activity. Involved in ascospore formation and positive regulation of transcription by RNA polymerase II. Predicted to be part of SAGA-type complex. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: XV
    Exon count:
    1
    Sequence:
    Chromosome: XV; NC_001147.6 (956898..957989)

    Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene Kre5p Neighboring gene Tea1p Neighboring gene putative E2 ubiquitin-protein ligase UBC11 Neighboring gene DNA-directed RNA polymerase I subunit RPA43

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001147.6

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence analysis of a 40 kb segment on the right arm of yeast chromosome XV reveals 18 open reading frames including a new pyruvate kinase and three homologues to chromosome I genes. Purnelle B, et al. Yeast, 1996 Nov. PMID 8948102
    2. Scp160p associates with specific mRNAs in yeast. Li AM, et al. Nucleic Acids Res, 2003 Apr 1. PMID 12654998, Free PMC Article
    3. The function and properties of the Azf1 transcriptional regulator change with growth conditions in Saccharomyces cerevisiae. Slattery MG, et al. Eukaryot Cell, 2006 Feb. PMID 16467472, Free PMC Article
    4. Large-scale functional genomic analysis of sporulation and meiosis in Saccharomyces cerevisiae. Enyenihi AH, et al. Genetics, 2003 Jan. PMID 12586695, Free PMC Article
    5. Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species. Beltrao P, et al. PLoS Biol, 2009 Jun 16. PMID 19547744, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables transcription coactivator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in ascospore formation HMP PubMed 
    involved_in chromatin remodeling IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of Rpd3L-Expanded complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_014983.1
    • hypothetical protein; YOR338W transcription is regulated by Azf1p and its transcript is a specific target of the G protein effector Scp160p; identified as being required for sporulation in a high-throughput mutant screen; YOR338W has a paralog, FUN19, that arose from the whole genome duplication

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001147.6 Reference assembly

      Range
      956898..957989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001183758.1 → NP_014983.1  TPA: uncharacterized protein YOR338W [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_014983.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6W333, Q06855, Q99326
      UniProtKB/TrEMBL
      A0A8H4BV99, A6ZPG8, B3LJZ7, B5VSL6, C7GNS8, N1NYZ2
      Conserved Domains (1) summary
      pfam04433
      Location:285 → 354
      SWIRM; SWIRM domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q99326.1

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