VPS41 VPS41 subunit of HOPS complex [Bos taurus (cattle)] - Gene

Summary

Official Symbol: VPS41provided by VGNC
Official Full Name: VPS41 subunit of HOPS complexprovided by VGNC
Primary source: VGNC:VGNC:36823
See related: BGD:BT15319; Ensembl:ENSBTAG00000007305
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Bos taurus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 30

Annotation release	Status	Assembly	Chr	Location
RS_2023_09	current	ARS-UCD2.0 (GCF_002263795.3)	4	NC_037331.1 (81966832..82193211)

Chromosome 4 - NC_037331.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

BMS1074 (e-PCR), detects polymorphism
- UniSTS:26932

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cellular response to starvation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in endosomal vesicle fusion	IEA Inferred from Electronic Annotation more info	PubMed
involved_in macroautophagy	IEA Inferred from Electronic Annotation more info	PubMed
involved_in protein targeting to vacuole	IEA Inferred from Electronic Annotation more info	PubMed
involved_in vesicle-mediated transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of HOPS complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in late endosome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: vacuolar protein sorting-associated protein 41 homolog

Names: VPS41, HOPS complex subunit; vacuolar protein sorting 41 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001083453.1 → NP_001076922.1 vacuolar protein sorting-associated protein 41 homolog

See identical proteins and their annotated locations for NP_001076922.1

Status: PROVISIONAL

Source sequence(s)

BC133481

UniProtKB/TrEMBL

A0A3Q1LTK2, A3KN15

Related

ENSBTAP00000009615.6, ENSBTAT00000009615.7

Conserved Domains (3) summary

smart00299
Location:571 → 708

CLH; Clathrin heavy chain repeat homology

sd00039
Location:88 → 132

7WD40; WD40 repeat [structural motif]

cd16690
Location:787 → 841

RING-H2_Vps41; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 41 (Vps41) and similar proteins