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    RPL6 ribosomal protein L6 [ Bos taurus (cattle) ]

    Gene ID: 511051, updated on 5-Mar-2024

    Summary

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    Gene symbol
    RPL6
    Gene description
    ribosomal protein L6
    See related
    BGD:BT27973; Ensembl:ENSBTAG00000031723
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 17
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (61837387..61842321)

    Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene rabphilin 3A Neighboring gene U6 spliceosomal RNA Neighboring gene protein tyrosine phosphatase non-receptor type 11 Neighboring gene HECT domain E3 ubiquitin protein ligase 4 Neighboring gene small nucleolar RNA SNORA79 Neighboring gene TRAF-type zinc finger domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Linkage mapping and comparative analysis of bovine expressed sequence tags (ESTs). Grosse WM, et al. Anim Genet, 2000 Jun. PMID 10895307
    2. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    3. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    4. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein eL6
    Names
    60S ribosomal protein L6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031756.2 → NP_001026926.1  large ribosomal subunit protein eL6

      See identical proteins and their annotated locations for NP_001026926.1

      Status: PROVISIONAL

      Source sequence(s)
      BT021543
      UniProtKB/Swiss-Prot
      A3KMZ3, Q58DQ3
      Related
      ENSBTAP00000042411.2, ENSBTAT00000033359.5
      Conserved Domains (2) summary
      cd13156
      Location:135 → 287
      KOW_RPL6; KOW motif of Ribosomal Protein L6
      pfam03868
      Location:41 → 94
      Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      61837387..61842321
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005217785.4 → XP_005217842.1  large ribosomal subunit protein eL6 isoform X1

      See identical proteins and their annotated locations for XP_005217842.1

      UniProtKB/Swiss-Prot
      A3KMZ3, Q58DQ3
      Conserved Domains (2) summary
      cd13156
      Location:135 → 287
      KOW_RPL6; KOW motif of Ribosomal Protein L6
      pfam03868
      Location:41 → 94
      Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain

    2. XM_005217786.4 → XP_005217843.1  large ribosomal subunit protein eL6 isoform X1

      See identical proteins and their annotated locations for XP_005217843.1

      UniProtKB/Swiss-Prot
      A3KMZ3, Q58DQ3
      Conserved Domains (2) summary
      cd13156
      Location:135 → 287
      KOW_RPL6; KOW motif of Ribosomal Protein L6
      pfam03868
      Location:41 → 94
      Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain

    3. XM_024977166.2 → XP_024832934.1  large ribosomal subunit protein eL6 isoform X1

      UniProtKB/Swiss-Prot
      A3KMZ3, Q58DQ3
      Conserved Domains (2) summary
      cd13156
      Location:135 → 287
      KOW_RPL6; KOW motif of Ribosomal Protein L6
      pfam03868
      Location:41 → 94
      Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q58DQ3.3 GenPept UniProtKB/Swiss-Prot:Q58DQ3

    Gene LinkOut

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