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    PEX1 peroxisomal biogenesis factor 1 [ Bos taurus (cattle) ]

    Gene ID: 505771, updated on 5-Mar-2024

    Summary

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    Official Symbol
    PEX1provided by VGNC
    Official Full Name
    peroxisomal biogenesis factor 1provided by VGNC
    Primary source
    VGNC:VGNC:32751
    See related
    BGD:BT14071; Ensembl:ENSBTAG00000024431
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (9789227..9870679, complement)

    Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-584-5 Neighboring gene transmembrane BAX inhibitor motif containing 7 Neighboring gene GATA zinc finger domain containing 1 Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene uncharacterized LOC524650 Neighboring gene RNA binding motif protein 48

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into peroxisome matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxisomal ATPase PEX1
    Names
    peroxisome biogenesis factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192071.2 → NP_001179000.2  peroxisomal ATPase PEX1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000004
      UniProtKB/TrEMBL
      A0A3Q1NJH1, E1BPU3
      Related
      ENSBTAP00000033778.4, ENSBTAT00000033872.6
      Conserved Domains (3) summary
      pfam09262
      Location:103 → 178
      PEX-1N; Peroxisome biogenesis factor 1, N-terminal
      pfam09263
      Location:18 → 97
      PEX-2N; Peroxisome biogenesis factor 1, N-terminal
      cl27568
      Location:594 → 1058
      TIP49; TIP49 C-terminus

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      9789227..9870679 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024990550.2 → XP_024846318.1  peroxisomal ATPase PEX1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1NJH1
      Related
      ENSBTAP00000084020.1, ENSBTAT00000124908.1
      Conserved Domains (3) summary
      pfam09262
      Location:103 → 178
      PEX-1N; Peroxisome biogenesis factor 1, N-terminal
      pfam09263
      Location:18 → 97
      PEX-2N; Peroxisome biogenesis factor 1, N-terminal
      cl27568
      Location:594 → 1058
      TIP49; TIP49 C-terminus
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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