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    LOC106583920 AP-2 complex subunit alpha-2-like [ Salmo salar (Atlantic salmon) ]

    Gene ID: 106583920, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC106583920
    Gene description
    AP-2 complex subunit alpha-2-like
    See related
    Ensembl:ENSSSAG00000001001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    Location:
    chromosome: ssa23
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa23 NC_059464.1 (2033411..2116005)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa23 NC_027322.1 (1683904..1766982)

    Chromosome ssa23 - NC_059464.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123729817 Neighboring gene protein arginine N-methyltransferase 1 Neighboring gene uncharacterized LOC106583921 Neighboring gene tyrosine-protein phosphatase vhp-1-like Neighboring gene ras-related protein R-Ras

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in clathrin-dependent endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-2 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-2 complex subunit alpha-1-like; AP-2 complex subunit alpha-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059464.1 Reference Ssal_v3.1

      Range
      2033411..2116005
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014168582.2 → XP_014024057.1  AP-2 complex subunit alpha-2-like isoform X1

      UniProtKB/TrEMBL
      A0A1S3P947
      Conserved Domains (4) summary
      pfam01602
      Location:29 → 591
      Adaptin_N; Adaptin N terminal region
      pfam02296
      Location:869 → 981
      Alpha_adaptin_C; Alpha adaptin AP2, C-terminal domain
      pfam02883
      Location:756 → 863
      Alpha_adaptinC2; Adaptin C-terminal domain
      pfam08167
      Location:141 → 292
      RIX1; rRNA processing/ribosome biogenesis

    2. XM_014168586.2 → XP_014024061.1  AP-2 complex subunit alpha-1-like isoform X5

      UniProtKB/TrEMBL
      A0A1S3P8Y7
      Conserved Domains (4) summary
      pfam01602
      Location:29 → 591
      Adaptin_N; Adaptin N terminal region
      pfam02296
      Location:851 → 942
      Alpha_adaptin_C; Alpha adaptin AP2, C-terminal domain
      pfam02883
      Location:756 → 850
      Alpha_adaptinC2; Adaptin C-terminal domain
      pfam08167
      Location:141 → 295
      RIX1; rRNA processing/ribosome biogenesis

    3. XM_014168583.2 → XP_014024058.1  AP-2 complex subunit alpha-2-like isoform X2

      UniProtKB/TrEMBL
      A0A1S3P906
      Conserved Domains (4) summary
      pfam01602
      Location:29 → 591
      Adaptin_N; Adaptin N terminal region
      pfam02296
      Location:869 → 977
      Alpha_adaptin_C; Alpha adaptin AP2, C-terminal domain
      pfam02883
      Location:756 → 863
      Alpha_adaptinC2; Adaptin C-terminal domain
      pfam08167
      Location:141 → 295
      RIX1; rRNA processing/ribosome biogenesis

    4. XM_014168584.2 → XP_014024059.1  AP-2 complex subunit alpha-1-like isoform X3

      UniProtKB/TrEMBL
      A0A1S3P8Y8
      Conserved Domains (4) summary
      pfam01602
      Location:29 → 591
      Adaptin_N; Adaptin N terminal region
      pfam02296
      Location:849 → 961
      Alpha_adaptin_C; Alpha adaptin AP2, C-terminal domain
      pfam02883
      Location:736 → 843
      Alpha_adaptinC2; Adaptin C-terminal domain
      pfam08167
      Location:141 → 295
      RIX1; rRNA processing/ribosome biogenesis

    5. XM_014168585.2 → XP_014024060.1  AP-2 complex subunit alpha-1-like isoform X4

      UniProtKB/TrEMBL
      A0A1S3P8V4
      Related
      ENSSSAP00000002237.2, ENSSSAT00000002396.2
      Conserved Domains (4) summary
      pfam01602
      Location:29 → 591
      Adaptin_N; Adaptin N terminal region
      pfam02296
      Location:849 → 957
      Alpha_adaptin_C; Alpha adaptin AP2, C-terminal domain
      pfam02883
      Location:736 → 843
      Alpha_adaptinC2; Adaptin C-terminal domain
      pfam08167
      Location:141 → 295
      RIX1; rRNA processing/ribosome biogenesis

    6. XM_014168587.2 → XP_014024062.1  AP-2 complex subunit alpha-2-like isoform X6

      UniProtKB/TrEMBL
      A0A1S3P951
      Conserved Domains (4) summary
      pfam01602
      Location:29 → 591
      Adaptin_N; Adaptin N terminal region
      pfam02296
      Location:825 → 937
      Alpha_adaptin_C; Alpha adaptin AP2, C-terminal domain
      pfam02883
      Location:712 → 819
      Alpha_adaptinC2; Adaptin C-terminal domain
      pfam08167
      Location:141 → 292
      RIX1; rRNA processing/ribosome biogenesis

    7. XM_014168588.2 → XP_014024063.1  AP-2 complex subunit alpha-2-like isoform X7

      UniProtKB/TrEMBL
      A0A1S3P912
      Related
      ENSSSAP00000002321.2, ENSSSAT00000002488.2
      Conserved Domains (4) summary
      pfam01602
      Location:29 → 591
      Adaptin_N; Adaptin N terminal region
      pfam02296
      Location:825 → 933
      Alpha_adaptin_C; Alpha adaptin AP2, C-terminal domain
      pfam02883
      Location:712 → 819
      Alpha_adaptinC2; Adaptin C-terminal domain
      pfam08167
      Location:141 → 295
      RIX1; rRNA processing/ribosome biogenesis
    Nucleotide Protein
    Heading Accession and Version

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