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    LOC100300059 neuroligin 4 X-linked [ Bos taurus (cattle) ]

    Gene ID: 100300059, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC100300059
    Gene description
    neuroligin 4 X-linked
    See related
    BGD:BT15226; Ensembl:ENSBTAG00000027841
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    NLGN4X; NLGN4Y
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    Genomic context

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    Location:
    chromosome: X, chromosome: Y
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (136305915..136697112)
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) Y NC_082638.1 (3414886..3809870, complement)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100847628 Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene uncharacterized LOC112445066 Neighboring gene U6 spliceosomal RNA Neighboring gene large ribosomal subunit protein eL31-like Neighboring gene uncharacterized LOC132344372 Neighboring gene odorant-binding protein-like

    Chromosome Y - NC_082638.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132344372 Neighboring gene odorant-binding protein-like Neighboring gene large ribosomal subunit protein eL31-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC100847628 Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene pseudouridine 5'-phosphatase Neighboring gene steroid sulfatase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables neurexin family protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in modulation of chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in postsynaptic membrane assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in presynaptic membrane assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic specialization membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neuroligin-4, X-linked
    Names
    neuroligin 4, Y-linked-like
    neuroligin-4, X-linked pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      136305915..136697112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059883924.1 → XP_059739907.1  neuroligin-4, X-linked isoform X2

      Related
      ENSBTAP00000083413.1, ENSBTAT00000104271.1

    2. XM_059883923.1 → XP_059739906.1  neuroligin-4, X-linked isoform X1

      UniProtKB/TrEMBL
      G3X7N7
      Related
      ENSBTAP00000039924.5, ENSBTAT00000040145.6

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_082638.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      3414886..3809870 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059884058.1 → XP_059740041.1  neuroligin-4, X-linked isoform X2

    2. XM_015461827.3 → XP_015317313.1  neuroligin-4, X-linked isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MHI7, G3X7N7
      Conserved Domains (2) summary
      COG0657
      Location:151 → 266
      Aes; Acetyl esterase/lipase [Lipid transport and metabolism]
      pfam00135
      Location:42 → 590
      COesterase; Carboxylesterase family
    Nucleotide Protein Strain
    Heading Accession and Version

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