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    SHROOM1 shroom family member 1 [ Bos taurus (cattle) ]

    Gene ID: 615958, updated on 6-Jun-2024

    Summary

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    Official Symbol
    SHROOM1provided by VGNC
    Official Full Name
    shroom family member 1provided by VGNC
    Primary source
    VGNC:VGNC:34608
    See related
    BGD:BT25971; Ensembl:ENSBTAG00000014676
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SHROOM1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (44413314..44421030, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132345745 Neighboring gene sosondowah ankyrin repeat domain family member A Neighboring gene growth differentiation factor 9 Neighboring gene ubiquinol-cytochrome c reductase complex III subunit VII

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC152429

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in apical junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cortical actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Shroom1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102294.1 → NP_001095764.1  protein Shroom1

      See identical proteins and their annotated locations for NP_001095764.1

      Status: PROVISIONAL

      Source sequence(s)
      BC151639
      UniProtKB/TrEMBL
      A0A3Q1MDX2, A7E301
      Related
      ENSBTAP00000068645.2, ENSBTAT00000079981.2
      Conserved Domains (3) summary
      pfam08687
      Location:535 → 814
      ASD2; Apx/Shroom domain ASD2
      pfam08688
      Location:140 → 222
      ASD1; Apx/Shroom domain ASD1
      cl26464
      Location:41 → 626
      Atrophin-1; Atrophin-1 family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      44413314..44421030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005209314.5 → XP_005209371.1  protein Shroom1 isoform X1

      See identical proteins and their annotated locations for XP_005209371.1

      UniProtKB/TrEMBL
      A0A3Q1MDX2, A7E301
      Conserved Domains (3) summary
      pfam08687
      Location:535 → 814
      ASD2; Apx/Shroom domain ASD2
      pfam08688
      Location:140 → 222
      ASD1; Apx/Shroom domain ASD1
      cl26464
      Location:41 → 626
      Atrophin-1; Atrophin-1 family

    2. XM_024994605.2 → XP_024850373.1  protein Shroom1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MDX2, A7E301
      Related
      ENSBTAP00000035318.4, ENSBTAT00000035443.6
      Conserved Domains (3) summary
      pfam08687
      Location:535 → 814
      ASD2; Apx/Shroom domain ASD2
      pfam08688
      Location:140 → 222
      ASD1; Apx/Shroom domain ASD1
      cl26464
      Location:41 → 626
      Atrophin-1; Atrophin-1 family

    3. XM_015472199.3 → XP_015327685.1  protein Shroom1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MDX2, A7E301
      Conserved Domains (3) summary
      pfam08687
      Location:535 → 814
      ASD2; Apx/Shroom domain ASD2
      pfam08688
      Location:140 → 222
      ASD1; Apx/Shroom domain ASD1
      cl26464
      Location:41 → 626
      Atrophin-1; Atrophin-1 family

    4. XM_024994604.2 → XP_024850372.1  protein Shroom1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MDX2, A7E301
      Conserved Domains (3) summary
      pfam08687
      Location:535 → 814
      ASD2; Apx/Shroom domain ASD2
      pfam08688
      Location:140 → 222
      ASD1; Apx/Shroom domain ASD1
      cl26464
      Location:41 → 626
      Atrophin-1; Atrophin-1 family

    5. XM_024994606.2 → XP_024850374.1  protein Shroom1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MDX2, A7E301
      Conserved Domains (3) summary
      pfam08687
      Location:535 → 814
      ASD2; Apx/Shroom domain ASD2
      pfam08688
      Location:140 → 222
      ASD1; Apx/Shroom domain ASD1
      cl26464
      Location:41 → 626
      Atrophin-1; Atrophin-1 family

    6. XM_059888385.1 → XP_059744368.1  protein Shroom1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MDX2, A7E301
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials