U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    UBR4 ubiquitin protein ligase E3 component n-recognin 4 [ Bos taurus (cattle) ]

    Gene ID: 514561, updated on 6-Jun-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    UBR4provided by VGNC
    Official Full Name
    ubiquitin protein ligase E3 component n-recognin 4provided by VGNC
    Primary source
    VGNC:VGNC:36618
    See related
    BGD:BT14728; Ensembl:ENSBTAG00000015240
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See UBR4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    108
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (133452107..133589504)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA70 Neighboring gene MRT4 homolog, ribosome maturation factor Neighboring gene ER membrane protein complex subunit 1 Neighboring gene small nucleolar RNA U3 Neighboring gene U1 spliceosomal RNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase UBR4
    NP_001192721.1
    XP_024857115.1
    XP_059749304.1
    XP_059749308.1
    XP_059749311.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205792.1 → NP_001192721.1  E3 ubiquitin-protein ligase UBR4

      See identical proteins and their annotated locations for NP_001192721.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000002
      UniProtKB/TrEMBL
      A0AAA9TU63
      Related
      ENSBTAP00000101912.1, ENSBTAT00000133057.1
      Conserved Domains (3) summary
      smart00396
      Location:1659 → 1726
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      pfam12773
      Location:3658 → 3702
      DZR; Double zinc ribbon
      pfam13764
      Location:4365 → 5161
      E3_UbLigase_R4; E3 ubiquitin-protein ligase UBR4

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      133452107..133589504
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059893321.1 → XP_059749304.1  E3 ubiquitin-protein ligase UBR4 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TU63

    2. XM_059893328.1 → XP_059749311.1  E3 ubiquitin-protein ligase UBR4 isoform X4

      UniProtKB/TrEMBL
      A0AAA9TKM9

    3. XM_059893325.1 → XP_059749308.1  E3 ubiquitin-protein ligase UBR4 isoform X3

      UniProtKB/TrEMBL
      A0AAA9TU63

    4. XM_025001347.2 → XP_024857115.1  E3 ubiquitin-protein ligase UBR4 isoform X2

      UniProtKB/TrEMBL
      A0AAA9TU63, E1BHT5
      Related
      ENSBTAP00000020277.7, ENSBTAT00000020277.7
      Conserved Domains (3) summary
      smart00396
      Location:1659 → 1726
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      pfam12773
      Location:3686 → 3730
      DZR; Double zinc ribbon
      pfam13764
      Location:4393 → 5189
      E3_UbLigase_R4; E3 ubiquitin-protein ligase UBR4
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.