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    Spata31f1a spermatogenesis associated 31 subfamily F member 1A [ Mus musculus (house mouse) ]

    Gene ID: 433698, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Spata31f1aprovided by MGI
    Official Full Name
    spermatogenesis associated 31 subfamily F member 1Aprovided by MGI
    Primary source
    MGI:MGI:3651059
    See related
    Ensembl:ENSMUSG00000078721 AllianceGenome:MGI:3651059
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm12394; Gm12429; Fam205a1
    Summary
    Orthologous to human FAM205A (family with sequence similarity 205 member A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 10.3), cortex adult (RPKM 2.7) and 6 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Spata31f1a in Genome Data Viewer
    Location:
    4 A5; 4 22.86 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (42848067..42856138, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (42848067..42859820, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930578G10 gene Neighboring gene C-C motif chemokine ligand 21 (serine) Neighboring gene predicted gene 9615 Neighboring gene STARR-seq mESC enhancer starr_10042 Neighboring gene spermatogenesis associated 31 subfamily F member 3 Neighboring gene PHD finger protein 24 Neighboring gene predicted gene, 52697

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Fam205a1 protein; fam205a1 protein
    Names
    family with sequence similarity 205, member A1
    protein FAM205A-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277167.1 → NP_001264096.1  Fam205a1 protein

      Status: VALIDATED

      Source sequence(s)
      AL772334, AV257990, BB572684
      Consensus CDS
      CCDS71367.1
      UniProtKB/TrEMBL
      D3YZF6
      Related
      ENSMUSP00000103613.2, ENSMUST00000107979.2
      Conserved Domains (2) summary
      pfam14650
      Location:416 → 687
      FAM75; FAM75 family
      pfam15371
      Location:55 → 136
      DUF4599; Domain of unknown function (DUF4599)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      42848067..42856138 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006538052.3 → XP_006538115.1  fam205a1 protein isoform X1

      Conserved Domains (3) summary
      pfam14650
      Location:397 → 582
      FAM75; FAM75 family
      pfam15371
      Location:45 → 119
      DUF4599; Domain of unknown function (DUF4599)
      pfam15402
      Location:1075 → 1273
      Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_006042.4: Suppressed sequence

      Description
      NG_006042.4: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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