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    LOC106569987 chromodomain-helicase-DNA-binding protein 4 [ Salmo salar (Atlantic salmon) ]

    Gene ID: 106569987, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC106569987
    Gene description
    chromodomain-helicase-DNA-binding protein 4
    See related
    Ensembl:ENSSSAG00000073889
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    See LOC106569987 in Genome Data Viewer
    Location:
    chromosome: ssa14
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa14 NC_059455.1 (63561407..63586880, complement)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa14 NC_027313.1 (58275345..58300736, complement)

    Chromosome ssa14 - NC_059455.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106569989 Neighboring gene uncharacterized LOC106570162 Neighboring gene cell division control protein 42 homolog Neighboring gene Gamma-enolase Neighboring gene triosephosphate isomerase 1a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NuRD complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059455.1 Reference Ssal_v3.1

      Range
      63561407..63586880 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014141815.2 → XP_013997290.2  chromodomain-helicase-DNA-binding protein 4 isoform X16

      UniProtKB/TrEMBL
      A0A1S3M2F1
      Related
      ENSSSAP00000098793.2, ENSSSAT00000133253.2

    2. XM_014141809.2 → XP_013997284.2  chromodomain-helicase-DNA-binding protein 4 isoform X11

      UniProtKB/TrEMBL
      A0A1S3M325

    3. XM_014141806.2 → XP_013997281.2  chromodomain-helicase-DNA-binding protein 4 isoform X8

      UniProtKB/TrEMBL
      A0A1S3M2L1

    4. XM_014141813.2 → XP_013997288.2  chromodomain-helicase-DNA-binding protein 4 isoform X15

      UniProtKB/TrEMBL
      A0A1S3M275
      Related
      ENSSSAP00000099222.2, ENSSSAT00000133698.2

    5. XM_014141808.2 → XP_013997283.2  chromodomain-helicase-DNA-binding protein 4 isoform X10

      UniProtKB/TrEMBL
      A0A1S3M270
      Related
      ENSSSAP00000099249.2, ENSSSAT00000133726.2

    6. XM_014141800.2 → XP_013997275.2  chromodomain-helicase-DNA-binding protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A1S3M2D6

    7. XM_014141807.2 → XP_013997282.2  chromodomain-helicase-DNA-binding protein 4 isoform X9

      UniProtKB/TrEMBL
      A0A1S3M233

    8. XM_014141804.2 → XP_013997279.2  chromodomain-helicase-DNA-binding protein 4 isoform X6

      UniProtKB/TrEMBL
      A0A1S3M318

    9. XM_014141805.2 → XP_013997280.2  chromodomain-helicase-DNA-binding protein 4 isoform X7

      UniProtKB/TrEMBL
      A0A1S3M2E2

    10. XM_014141802.2 → XP_013997277.2  chromodomain-helicase-DNA-binding protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A1S3M229

    11. XM_014141812.2 → XP_013997287.2  chromodomain-helicase-DNA-binding protein 4 isoform X14

      UniProtKB/TrEMBL
      A0A1S3M238

    12. XM_014141803.2 → XP_013997278.2  chromodomain-helicase-DNA-binding protein 4 isoform X5

      UniProtKB/TrEMBL
      A0A1S3M265
      Related
      ENSSSAP00000099207.2, ENSSSAT00000133683.2

    13. XM_014141811.2 → XP_013997286.2  chromodomain-helicase-DNA-binding protein 4 isoform X13

      UniProtKB/TrEMBL
      A0A1S3M2L8

    14. XM_014141810.2 → XP_013997285.2  chromodomain-helicase-DNA-binding protein 4 isoform X12

      UniProtKB/TrEMBL
      A0A1S3M2E7

    15. XM_014141801.2 → XP_013997276.2  chromodomain-helicase-DNA-binding protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A1S3M2K6

    16. XM_014141799.2 → XP_013997274.2  chromodomain-helicase-DNA-binding protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A1S3M315
    Nucleotide Protein
    Heading Accession and Version

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