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    LOC100380648 ATP-dependent RNA helicase DDX18 [ Salmo salar (Atlantic salmon) ]

    Gene ID: 100380648, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC100380648
    Gene description
    ATP-dependent RNA helicase DDX18
    See related
    Ensembl:ENSSSAG00000063891
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    Also known as
    ddx18
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    Genomic context

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    See LOC100380648 in Genome Data Viewer
    Location:
    chromosome: ssa25
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa25 NC_059466.1 (8866654..8891125)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa25 NC_027324.1 (8520348..8544908)

    Chromosome ssa25 - NC_059466.1Genomic Context describing neighboring genes Neighboring gene inactive dipeptidyl peptidase 10 Neighboring gene inactive dipeptidyl peptidase 10 Neighboring gene small nucleolar RNA SNORA9 Neighboring gene gap junction gamma-1 protein-like Neighboring gene lactase-phlorizin hydrolase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase DDX18
    Names
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059466.1 Reference Ssal_v3.1

      Range
      8866654..8891125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014172991.2 → XP_014028466.1  ATP-dependent RNA helicase DDX18 isoform X2

      UniProtKB/TrEMBL
      A0A1S3PLB7, A0A1S3PLI6
      Conserved Domains (4) summary
      smart00487
      Location:122 → 310
      DEXDc; DEAD-like helicases superfamily
      cd00079
      Location:328 → 457
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cd00268
      Location:107 → 314
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      pfam13959
      Location:489 → 547
      DUF4217; Domain of unknown function (DUF4217)

    2. XM_014172990.2 → XP_014028465.2  ATP-dependent RNA helicase DDX18 isoform X1

      UniProtKB/TrEMBL
      A0A1S3PLB7
      Related
      ENSSSAP00000072910.2, ENSSSAT00000106198.2
    Nucleotide Protein
    Heading Accession and Version

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