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COX6A1P2 COX6A1 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 285849, updated on 10-Oct-2023

Summary

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Official Symbol
COX6A1P2provided by HGNC
Official Full Name
COX6A1 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:35239
See related
AllianceGenome:HGNC:35239
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See COX6A1P2 in Genome Data Viewer
Location:
6p21.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (37044846..37045382)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (36868401..36868937)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (37012622..37013158)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:36948504-36949104 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:36953526-36954248 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24447 Neighboring gene mitochondrial carrier 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:36960675-36960875 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:36965399-36966022 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:36966023-36966646 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:36973029-36973191 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24448 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24449 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:36979647-36980146 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:36981577-36982294 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:36992286-36993485 Neighboring gene FYVE, RhoGEF and PH domain containing 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24450 Neighboring gene CRISPRi-validated cis-regulatory element chr6.2470 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24451 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:37024071-37024957 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:37025005-37025506 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:37025507-37026006 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17124 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17125 Neighboring gene Sharpr-MPRA regulatory region 8589 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17126 Neighboring gene Sharpr-MPRA regulatory region 8119 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:37045201-37045729 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:37051359-37051859 Neighboring gene Sharpr-MPRA regulatory region 7768 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:37069635-37070242 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:37070243-37070850 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24452 Neighboring gene ribosomal protein L12 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17129 Neighboring gene CRISPRi-validated cis-regulatory element chr6.2479 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:37083327-37083916 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:37091769-37092747 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:37092748-37093726 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:37093727-37094705 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:37094807-37095484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:37098237-37099155 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:37099156-37100073 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:37105214-37106050 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:37109113-37109630 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:37137173-37137771 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17131 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:37139693-37140286 Neighboring gene Pim-1 proto-oncogene, serine/threonine kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning, characterization, and chromosomal localization of human liver form cytochrome c oxidase subunit VIa related genes. Merante F, et al. Genome, 1997 Jun. PMID 9202413
  2. Assignment of COX6A1 to 6p21 and a pseudogene (COX6A1P) to 1p31.1 by in situ hybridization and somatic cell hybrids. Hey Y, et al. Cytogenet Cell Genet, 1997. PMID 9284905

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • cytochrome c oxidase subunit 6A1 pseudogene 2
  • cytochrome c oxidase subunit VIa polypeptide 1 pseudogene 2
  • ytochrome c oxidase subunit VIa polypeptide 1 pseudogene 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_004806.5 

    Range
    101..637
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    37044846..37045382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    36868401..36868937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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