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    Trappc2l trafficking protein particle complex 2L [ Mus musculus (house mouse) ]

    Gene ID: 59005, updated on 30-Apr-2024

    Summary

    Official Symbol
    Trappc2lprovided by MGI
    Official Full Name
    trafficking protein particle complex 2Lprovided by MGI
    Primary source
    MGI:MGI:1916295
    See related
    Ensembl:ENSMUSG00000015013 AllianceGenome:MGI:1916295
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tca17; Hspc176; 1810017G16Rik
    Summary
    Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in cytosol and intracellular membrane-bounded organelle. Predicted to be part of TRAPP complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human TRAPPC2L (trafficking protein particle complex subunit 2L). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in kidney adult (RPKM 68.6), testis adult (RPKM 58.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    Location:
    8 E1; 8 71.92 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (123338365..123342330)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (122611626..122615591)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene galactosamine (N-acetyl)-6-sulfatase Neighboring gene predicted gene, 34962 Neighboring gene 60S ribosomal protein L30 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E1777 Neighboring gene poly(A)binding protein nuclear 1-like Neighboring gene microRNA 6396 Neighboring gene CBFA2/RUNX1 translocation partner 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:125190682-125190990 Neighboring gene predicted gene 10612

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in COPII vesicle coating NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in vesicle coating NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in vesicle tethering NAS
    Non-traceable Author Statement
    more info
    PubMed 
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of TRAPP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of TRAPP complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of TRAPPII protein complex NAS
    Non-traceable Author Statement
    more info
    PubMed 
    part_of TRAPPIII protein complex NAS
    Non-traceable Author Statement
    more info
    PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm NAS
    Non-traceable Author Statement
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    trafficking protein particle complex subunit 2-like protein
    Names
    trafficking protein particle complex 2-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021502.2NP_067477.1  trafficking protein particle complex subunit 2-like protein

      See identical proteins and their annotated locations for NP_067477.1

      Status: VALIDATED

      Source sequence(s)
      BC028502, BY091059
      Consensus CDS
      CCDS22742.1
      UniProtKB/Swiss-Prot
      A4FUI9, Q9JME7
      Related
      ENSMUSP00000015157.9, ENSMUST00000015157.10
      Conserved Domains (1) summary
      pfam04628
      Location:7137
      Sedlin_N; Sedlin, N-terminal conserved region

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      123338365..123342330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)