Alignment last updated: 01/15/2014 17:24:50
Join Legend
Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <50 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.6%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.6%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.
Alignment for AC190784.3 and AC190890.5
Download Genome Workbench
Swap Rows Rotate Orientations
Swap Rows Rotate Orientations
AC190784.3 Zea mays chromosome 1 clone ZMMBBb-518C23, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces [htgs_limited_order]
Length: 125,019 bp
AC190890.5 Zea mays chromosome 1 clone CH201-31A16, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces [htgs_limited_order]
Length: 168,199 bp
Alignment Summary
Join evaluation: Alignment count: 1
|
(half-dovetail of >50bp)
Alignment 1 of 1
AC190784.3 : + : 110331..125019 AC190890.5 : + : 44675..59365 Mismatches = 1, Gaps = 4, Length = 14692 Percent identity = 99.99% Score = 2.71e+04 bits (14675), Expect = 0 3 BAC and 2 Fosmid bridging clones. 3 BAC and 1 Fosmid concordant clones. 0 BAC and 1 Fosmid discordant clones. AC190784.3 >110331 caattaaagataatatcaagt-gtagctgtaaaaacagacgcagttattcaaagcaaagc 110389 AC190890.5 >44675 .....................g...................................... 44734 AC190784.3 >110390 tatttcgaacactgtgatgattatgacaggatgatacaacaggtttatgttcagtgaaag 110449 AC190890.5 >44735 ....................-....................................... 44793 AC190784.3 >110450 atcttattacttcacaactagcttgggaaaataaaaatgtgtgttccatatactttaata 110509 AC190890.5 >44794 ............................................................ 44853 AC190784.3 >110510 attaaagaaattctttttttttgaaaaccggcaagagaattgcctgttatattaaaaaga 110569 AC190890.5 >44854 ............................................................ 44913 AC190784.3 >110570 agatgagcgcctgcaagggctaaagtatacaagtacaccacactagggaaggagacatta 110629 AC190890.5 >44914 ............................................................ 44973 AC190784.3 >110630 ggtatggtgacacaaatgtcccaaaaccaaccccctctccttccccaaaacttacagcag 110689 AC190890.5 >44974 ............................................................ 45033 AC190784.3 >110690 ccttgctaaatgcattgctcctcctagaatccacagacggatttgctccttaatcatcgc 110749 AC190890.5 >45034 ............................................................ 45093 AC190784.3 >110750 tatagtctgtgtcaccatgattatctactagggtgacaagctgacaaaagaccgagatgg 110809 AC190890.5 >45094 ............................................................ 45153 AC190784.3 >110810 gcaaaataaaaaaatgaattgtcaaccaagaccaacagtgttgtaattactattgtaacg 110869 AC190890.5 >45154 ............................................................ 45213 AC190784.3 >110870 ttcttgctagtatgtgggttttaaatatattgccaacataccacaacactaaaaaagggc 110929 AC190890.5 >45214 ............................................................ 45273 AC190784.3 >110930 gtatccagtgtcgtaggcttcccgcactgtgcggggtctggggaagggtatctttaagcg 110989 AC190890.5 >45274 ............................................................ 45333 AC190784.3 >110990 tcaagccttacccgcataatatgcagaggctgaggctcgaacccgggaccttccggttac 111049 AC190890.5 >45334 ............................................................ 45393 AC190784.3 >111050 agacggtaggctctatcgctgcaccaggcctgcccttctaacatgccacaacactaaaga 111109 AC190890.5 >45394 ............................................................ 45453 AC190784.3 >111110 aaaagattctaaaaagaatgttgaatcttctatggttcttcaacctaatctgcaaacaca 111169 AC190890.5 >45454 ............................................................ 45513 AC190784.3 >111170 tgtgctacaaagatatgagaaccaacaataatggatttgtgtatgtaatatggcatagta 111229 AC190890.5 >45514 ............................................................ 45573 AC190784.3 >111230 tatgtgggaaaccctaaccaggttgggtgagcatatatatataagctgagtaattggacc 111289 AC190890.5 >45574 ............................................................ 45633 AC190784.3 >111290 aagcctattacactgagggtatacaggtaattacacaaggactaaccccgaaaccctaac 111349 AC190890.5 >45634 ............................................................ 45693 AC190784.3 >111350 aatactctaacacccccccccccgcagtcacaattctatcatgtacagatgttgagagtg 111409 AC190890.5 >45694 ............................................................ 45753 AC190784.3 >111410 gaacgaaaatcgacgaagacactcaacggcagccccttggtgaagatgtcggtgaactgc 111469 AC190890.5 >45754 ............................................................ 45813 AC190784.3 >111470 agcgtggtggggacgctgagaacccg-aacgtcaccgacagcgaccctctcacggataaa 111528 AC190890.5 >45814 ..........................a................................. 45873 AC190784.3 >111529 gtgcagatcgatctccacgtgcttcgtgcgatgatgctgcacgagattggtggagaggta 111588 AC190890.5 >45874 ............................................................ 45933 AC190784.3 >111589 gaccgcgttgacgttatcgcagtagacgaggctggcgcgctggagggggctgtggagctc 111648 AC190890.5 >45934 ............................................................ 45993 AC190784.3 >111649 gtggagaagctggagtaaccaggaggcctctgccacaacattggccacagcgcattactc 111708 AC190890.5 >45994 ............................................................ 46053 AC190784.3 >111709 ggcctccgcgctggagcgggagacgatgagatgccgcttggcgaccaaggagacgaggtt 111768 AC190890.5 >46054 ............................................................ 46113 AC190784.3 >111769 ggcgcccaggaacacgacatagccagaagtggatcgacgcgtgtcgggacagccggccca 111828 AC190890.5 >46114 ............................................................ 46173 AC190784.3 >111829 atcagtgtcggtgtagaccacgagctctgacgtcggggatggacggaggaggaggtcgta 111888 AC190890.5 >46174 ............................................................ 46233 AC190784.3 >111889 gtcgagggagccgcggaggtagcgcaggatctgcatgagagcggtgaggtggggctcccg 111948 AC190890.5 >46234 ............................................................ 46293 AC190784.3 >111949 gtgtgcatgttcaagcacacctgctggacggcgtagccgatgtcgggcctggagaaggtg 112008 AC190890.5 >46294 ............................................................ 46353 AC190784.3 >112009 aggtactggagcgcgccggtcaggctccggtaagacgtctcgtcggtgactgggggctcg 112068 AC190890.5 >46354 ............................................................ 46413 AC190784.3 >112069 tcgtccacagagagcttcgcctaagtgtcgacaggcgtggagcagagcttgcagtcggac 112128 AC190890.5 >46414 ............................................................ 46473 AC190784.3 >112129 atgccatcccactccaggatgtcgatgacgtactggcgctggtgaaggaagagatcctga 112188 AC190890.5 >46474 ......................................................c..... 46533 AC190784.3 >112189 ggccagcgttcggaggtgatgccgagggagtggtggaggaaccctaggtccttcatcgcg 112248 AC190890.5 >46534 ............................................................ 46593 AC190784.3 >112249 aactcccgctgtttgggtgatgatcgtgcgctgtaggcgatcgacgggtggatgtcgtaa 112308 AC190890.5 >46594 ............................................................ 46653 AC190784.3 >112309 gcacaatgtcgtcgacgtagagcaaggaggtagaagatgtcatcgtcgcgccggtagatg 112368 AC190890.5 >46654 ............................................................ 46713 AC190784.3 >112369 aagagtggtgtgtcccgactttggcctcgatgaagccgatgagcagtagagcgaagcgac 112428 AC190890.5 >46714 ............................................................ 46773 AC190784.3 >112429 tgtaccaggcccgtgcgcctgcttaggacgtagagggagcggttcagccggcagaccaga 112488 AC190890.5 >46774 ............................................................ 46833 AC190784.3 >112489 tcagggcgaacggtgtcgacgaagccaatgggctggctgcagtagacagtctccgttaga 112548 AC190890.5 >46834 ............................................................ 46893 AC190784.3 >112549 gtgtcatggaggaaggcattcttgacgtcgagctgatggatcgcccagtcccgggagagg 112608 AC190890.5 >46894 ............................................................ 46953 AC190784.3 >112609 gcgagggagaggacggcgtgaaacgatggcgaacttgacgacgggggctgaaggtctcgt 112668 AC190890.5 >46954 ............................................................ 47013 AC190784.3 >112669 cgtagtccactcc-ggggtgctgggtgaagccccgaaggacccaacgggccttgcaacag 112727 AC190890.5 >47014 .............g.............................................. 47073 AC190784.3 >112728 tcgcgagagccgtccgaggtcaccttgtggcgaaagagccacttgccggtgaccacattg 112787 AC190890.5 >47074 ............................................................ 47133 AC190784.3 >112788 gtgcctggaggacacggcaccaggtcccaagtgtggttggccagcagggccgcgtactcc 112847 AC190890.5 >47134 ............................................................ 47193 AC190784.3 >112848 tccatagcacgacgccagtgtgggtcagcgagggcggtagcgaacacaggaggggaccag 112907 AC190890.5 >47194 ............................................................ 47253 AC190784.3 >112908 ggaggcgtccggaggagtgacggtcatatcagcggccagaatcaggcgatcgacggggcg 112967 AC190890.5 >47254 ............................................................ 47313 AC190784.3 >112968 aagaacaccgaaggcgcgccgagtcactatcgggtggacgtgcccggggtcgcggtggat 113027 AC190890.5 >47314 ............................................................ 47373 AC190784.3 >113028 ggcgaccgggtgatacacaggcagcgcagagcgggccgccgggacgtagggggccgcgga 113087 AC190890.5 >47374 ............................................................ 47433 AC190784.3 >113088 cgtggccggctcgcggcggtgatagacgacggcggggtcgacatagcaagttgcgctcgt 113147 AC190890.5 >47434 ............................................................ 47493 AC190784.3 >113148 cgacgggcctaggtccgtgggtgccgagggagtgggcgcccgcagaggtggtagacgagg 113207 AC190890.5 >47494 ............................................................ 47553 AC190784.3 >113208 gcgggatcggcgaagcgagtcgcgctcgtcgacggggccgcgcaggtcgcgggaggactc 113267 AC190890.5 >47554 ............................................................ 47613 AC190784.3 >113268 gacggggccgcacgtggcgcgggaagaggcgtgagtggagggtgtcggggtcgcacgcgg 113327 AC190890.5 >47614 ............................................................ 47673 AC190784.3 >113328 tgcaggcaatggcgcgaggcagggtgcctgggtggaggggtaatcagatcggactcaaga 113387 AC190890.5 >47674 ............................................................ 47733 AC190784.3 >113388 agggagtcgagatcggtgggtgtgaaggagtcagcaagatctccctgcttgggcgatcaa 113447 AC190890.5 >47734 ............................................................ 47793 AC190784.3 >113448 ggcaattgacatattaaggagagctttcctttggaaaggtgggaaagaaatcaagggagg 113507 AC190890.5 >47794 ............................................................ 47853 AC190784.3 >113508 gcaatgttctttggcttggagtaaagtcactcgtcctaaagaattgggtggtcttggtct 113567 AC190890.5 >47854 ............................................................ 47913 AC190784.3 >113568 ttttgatttaaaattgtctggttgggctcttagagtcaggtggctttggttgcagaaatc 113627 AC190890.5 >47914 ............................................................ 47973 AC190784.3 >113628 agatcctgggaggccgtgggctgtttttccgcttcatttcacaaaggaagtggtttgcct 113687 AC190890.5 >47974 ............................................................ 48033 AC190784.3 >113688 attcaattctgctgtgtatactgagattggaaatggtttaaacacactcttttggactga 113747 AC190890.5 >48034 ............................................................ 48093 AC190784.3 >113748 taaatggctgcatgggcactgcatccaagagcttgcccctgcagtgtttgcctctattcc 113807 AC190890.5 >48094 ............................................................ 48153 AC190784.3 >113808 taggaaggttaccaaaagtagattggttaaggatgccttgactaatttgagttgggttca 113867 AC190890.5 >48154 ............................................................ 48213 AC190784.3 >113868 agatgttcagggagctctttcctatgctttctgggtgcagtttttggaattggctgagat 113927 AC190890.5 >48214 ............................................................ 48273 AC190784.3 >113928 cctggaaggtaccttgctgcagcccaatgtgcaagatcgtcatgtttggaggttttctag 113987 AC190890.5 >48274 ............................................................ 48333 AC190784.3 >113988 ttccggtgaatattcttcaaaatccgcttacactgctatgttccatggctcggtgttttt 114047 AC190890.5 >48334 ............................................................ 48393 AC190784.3 >114048 caagcaggctgatcgaatttggaagacatgggcccctagcaaatgtcggttttttctatg 114107 AC190890.5 >48394 ............................................................ 48453 AC190784.3 >114108 gcttgtgggtcacaacaaatgttggacagcagatagattggctaaaagaggattgactca 114167 AC190890.5 >48454 ............................................................ 48513 AC190784.3 >114168 gtcgcttctttgcccgctctgtgatcaacatgatgagactatcaaccatctgctggtggg 114227 AC190890.5 >48514 ............................................................ 48573 AC190784.3 >114228 ctgctcctttgcgcgtcatttctggtttgagttgctcaggccttttggtttgcaggactt 114287 AC190890.5 >48574 ............................................................ 48633 AC190784.3 >114288 ccttccaggacaggatatagatgattttgatcactggtggtgtttcaatagtgctcggct 114347 AC190890.5 >48634 ............................................................ 48693 AC190784.3 >114348 gggtgggctgagtaagaagggctttgactccttggtcgctttaggcgcttggatgttgtg 114407 AC190890.5 >48694 ............................................................ 48753 AC190784.3 >114408 gaagcatagaaatggtgttgtcttcaatggttcccatccaaacttggtggtggtcgttcg 114467 AC190890.5 >48754 ............................................................ 48813 AC190784.3 >114468 gttggccagggaggaagctttcttgtggtctttggctagggctaagggtttttcttacct 114527 AC190890.5 >48814 ............................................................ 48873 AC190784.3 >114528 cctagctcaaagtcgggtgatttagttttctgttttagtgttggggtgtctgtcagctga 114587 AC190890.5 >48874 ............................................................ 48933 AC190784.3 >114588 caaacactctgtccctgcccctgctccagatgttgtttctggctaggtggggttcggtgt 114647 AC190890.5 >48934 ............................................................ 48993 AC190784.3 >114648 gtgtgtgtgtgttgtactgtctgttcggggtcttttccccttttcttcttaatacattga 114707 AC190890.5 >48994 ............................................................ 49053 AC190784.3 >114708 cgcgcagctctcctgcgtgttcgagaaaaaaaagagtcagcaaggggaaacacatctttg 114767 AC190890.5 >49054 ............................................................ 49113 AC190784.3 >114768 tcgaagacgacgtgacgggagacgatgatgcggtgtgaggcgaggtcaagacaacgatac 114827 AC190890.5 >49114 ............................................................ 49173 AC190784.3 >114828 cccttgtggtcaggggagtagccaaggaagaggcaccgagtggagcgaggagataactta 114887 AC190890.5 >49174 ............................................................ 49233 AC190784.3 >114888 tgaggagcggtggcggaagtgttcggatagcaggcacagccgaacacgcgaaggtggtcg 114947 AC190890.5 >49234 ............................................................ 49293 AC190784.3 >114948 taggagggggttgtgtcgtacaaggcgaagtggggagtagggtggctcaccgccttcgag 115007 AC190890.5 >49294 ............................................................ 49353 AC190784.3 >115008 ggaaggcggttgaggaggtgggtggcagtgtgcaaggcctctgcctagtagctagcaggt 115067 AC190890.5 >49354 ............................................................ 49413 AC190784.3 >115068 agagatgcctggaagagaagacatcagatcatattggtggtggtgcgtatcatgtgtttg 115127 AC190890.5 >49414 ............................................................ 49473 AC190784.3 >115128 gcccagccgttctgggcagaggtgtagggacacgagagacgcaactggatgcaattgatg 115187 AC190890.5 >49474 ............................................................ 49533 AC190784.3 >115188 agaaagaaaggacgggaggcgtggttgtcgaactcgcggccattgtcacactgcagggca 115247 AC190890.5 >49534 ............................................................ 49593 AC190784.3 >115248 cggaccgggcgacgaaaatgggtggatcaggcgaagaagtgtgtgagggtggtgaatgtg 115307 AC190890.5 >49594 ............................................................ 49653 AC190784.3 >115308 tcagacttcaaccgaagataagtccaaagaaaatggggaaaatcatccaaaatcatcaaa 115367 AC190890.5 >49654 ............................................................ 49713 AC190784.3 >115368 tagtagttataactagaaagactgagtacacgggaggtccagagatcacaatgaaccagg 115427 AC190890.5 >49714 ............................................................ 49773 AC190784.3 >115428 tcaaaagcctgctcagcccgagaagaagtagtgaatgtgagacgagtatgtcggcctaac 115487 AC190890.5 >49774 ............................................................ 49833 AC190784.3 >115488 tgacaagcataacagaggccctcaaaatgtcccctactacatgaagaatctaagctgctg 115547 AC190890.5 >49834 ............................................................ 49893 AC190784.3 >115548 gtaagcttggtcatgacgtcaggtcctgggtggccgagacgacgatgccaaatggtggag 115607 AC190890.5 >49894 ............................................................ 49953 AC190784.3 >115608 gtggtggtggagaccaggactgaaggtggagacgcgccggtggaggaaggccggagcgtg 115667 AC190890.5 >49954 ............................................................ 50013 AC190784.3 >115668 tagaggggccagcgctgtcacatcaggcgagaggggtcctagtcgccagatccttcacag 115727 AC190890.5 >50014 ............................................................ 50073 AC190784.3 >115728 aaaaatcaaaaaggtcaaactcaatggaacaagaattgtcggtggtgaaccgacggacag 115787 AC190890.5 >50074 ............................................................ 50133 AC190784.3 >115788 aaaggagattatgggtgatgtgagggtctacgagaacatcattgagatagaacggcccaa 115847 AC190890.5 >50134 ............................................................ 50193 AC190784.3 >115848 ggagaaccgaggcacctactgaggtgaccggcagattggaaccgtttccaacgacaatcg 115907 AC190890.5 >50194 ............................................................ 50253 AC190784.3 >115908 aggtgggatgggagtaatgaggtggatgggagcgagatagcatgcctgcagtgggggtgg 115967 AC190890.5 >50254 ............................................................ 50313 AC190784.3 >115968 tgtggtaggaggcaccgaagtcgatgacccaatcagatgagggtggggccaacgccatgg 116027 AC190890.5 >50314 ............................................................ 50373 AC190784.3 >116028 tgcttataggcggtggcgagggaggctgggcccaggctccagcttgcggggaccagggag 116087 AC190890.5 >50374 ............................................................ 50433 AC190784.3 >116088 tcatggtgggggtacccggaggggggagctgaggcggagcctgggtcgtcggaggcacgc 116147 AC190890.5 >50434 ............................................................ 50493 AC190784.3 >116148 cgtatggaggtatgtcataggcagacgtctgaggtgcgccataaggggggcacagtcagg 116207 AC190890.5 >50494 ............................................................ 50553 AC190784.3 >116208 agagccggcaccagaggacgggaggcactcggggcctgacccggccacatggagatggtt 116267 AC190890.5 >50554 ............................................................ 50613 AC190784.3 >116268 ccggtccaaggattgtagaaggacggccagccctagccagtggaaccttcgcgggtggag 116327 AC190890.5 >50614 ............................................................ 50673 AC190784.3 >116328 ccgccacccccgcgcccgcccttgcgggggcgacgctccgtcggcggtggcagctggacg 116387 AC190890.5 >50674 ............................................................ 50733 AC190784.3 >116388 agggaccgcaagggccgcggtaggaggcgaggggccggccttccggaagacacctggccg 116447 AC190890.5 >50734 ............................................................ 50793 AC190784.3 >116448 tcgggaggagcgttgtagagtgccgaggccggagagggtgcctcggtcgccatggtgagc 116507 AC190890.5 >50794 ............................................................ 50853 AC190784.3 >116508 tcctcgaggagaagctcgttccgcacggcatggaaggtgggaaagggcacggtcctcttg 116567 AC190890.5 >50854 ............................................................ 50913 AC190784.3 >116568 atgagagccttcaggtggccatagtgggggctgaggccacgcatgaggttcaacaccaag 116627 AC190890.5 >50914 ............................................................ 50973 AC190784.3 >116628 gtacggtcgaccaccggctcgccgaggtcgcggagggagtccgctaggaccttcatctgg 116687 AC190890.5 >50974 ............................................................ 51033 AC190784.3 >116688 cggcagtactcccccatggaggggccccctgagagaactggtagaactgggtgtcgaggt 116747 AC190890.5 >51034 ............................................................ 51093 AC190784.3 >116748 gaagggcccgagcgtcccgaatcccgaggaactgttcctcgagggcgagccacacctgtc 116807 AC190890.5 >51094 ............................................................ 51153 AC190784.3 >116808 ggttggtgtctgcctggtcgcgaatgatgtcttgtagctcgatagtgatggtgtcatgga 116867 AC190890.5 >51154 ............................................................ 51213 AC190784.3 >116868 gccacgagagcaccacactgtccatcaggcaccaagatgtggtgggttgaccaggtcgac 116927 AC190890.5 >51214 ............................................................ 51273 AC190784.3 >116928 gaggacgtggtcggcgagagcatattgccaaagcgtgagaacctgcccccgccaacgagg 116987 AC190890.5 >51274 ............................................................ 51333 AC190784.3 >116988 gtagtgggaggacgccgggtccaacacaatggacacaagggaccggatgttgtggagtcc 117047 AC190890.5 >51334 ............................................................ 51393 AC190784.3 >117048 gacgacctgagcgtggagagtggtgacgtggtcgacgtcgagaccatgggcagcctcggg 117107 AC190890.5 >51394 ............................................................ 51453 AC190784.3 >117108 tgtgggcgtgggtgtctcgtggtcgaccggaggatggccgaggaagagacgttgcgcggt 117167 AC190890.5 >51454 ............................................................ 51513 AC190784.3 >117168 ggccatatgggcggtcagagcagcgcacatggcacgctcgtgctctagagcgagggacgt 117227 AC190890.5 >51514 ............................................................ 51573 AC190784.3 >117228 ggcgcgctgacgctcctgtgaggcagccacggtggcctggatggtggcgatggcgacgac 117287 AC190890.5 >51574 ............................................................ 51633 AC190784.3 >117288 aagtgaggagtcgacggctggcgccgtggaggactcgatggtggcaaggccggcgggtgc 117347 AC190890.5 >51634 ............................................................ 51693 AC190784.3 >117348 agcgagggcgagaaaccccgacggaggcccagcgccggagcggcggcatgacggccggag 117407 AC190890.5 >51694 ............................................................ 51753 AC190784.3 >117408 gaggggcgtcaagcaggggcctgaggtcggcgatgtagggggcgcccacagtgagctcgc 117467 AC190890.5 >51754 ............................................................ 51813 AC190784.3 >117468 tgcgggggtcgtggggtagaggacgttcggctgttaggccgaccacagcaagggaggcga 117527 AC190890.5 >51814 ............................................................ 51873 AC190784.3 >117528 acatggcagcagcgccctctgcccgaccgacgacggcttgcactggtagccctgtggcgg 117587 AC190890.5 >51874 ............................................................ 51933 AC190784.3 >117588 ctgtgcgcgcgcccaggggcattgtggcgggtggggcgatggcctggccggcggtcacgg 117647 AC190890.5 >51934 ............................................................ 51993 AC190784.3 >117648 ccacggcggtggcgctggggctgtcgccgccgatgggggacgaggggagggccgccatgg 117707 AC190890.5 >51994 ............................................................ 52053 AC190784.3 >117708 ggaggtggcagctggggcagaggatgtcggcgcggccggagcagagggatctggcggctt 117767 AC190890.5 >52054 ............................................................ 52113 AC190784.3 >117768 gcgaggccggtgatgacggcagcgggcgcgggcgcggccgggctcggggtggaggagggg 117827 AC190890.5 >52114 ............................................................ 52173 AC190784.3 >117828 aagggcggccggtgggtggcaccggcggcagcggctgctgggcagcggccggggtcgaga 117887 AC190890.5 >52174 ............................................................ 52233 AC190784.3 >117888 gggaggggagagaaaagtggaactaacctagctctataccatgtgggaaaccctaaccct 117947 AC190890.5 >52234 ............................................................ 52293 AC190784.3 >117948 aaccgggttgggtgagcttatatatataagctgagtaattggatcaagcccattacactg 118007 AC190890.5 >52294 ............................................................ 52353 AC190784.3 >118008 agggtatacaggtaattacacggggactaaccctgaaaccctaacagtactctaacagta 118067 AC190890.5 >52354 ............................................................ 52413 AC190784.3 >118068 taaaatgtctatcatcccatgggatttcattttatacctacactaaacatatgggcatgg 118127 AC190890.5 >52414 ............................................................ 52473 AC190784.3 >118128 caaagcatacatatactatgtcaaatattaaaaaaataaattgtgaaaagtaaccacgac 118187 AC190890.5 >52474 ............................................................ 52533 AC190784.3 >118188 taagaaaaatataagttttgtccaaaagaggttgcaaaaacagtataactggggaacatc 118247 AC190890.5 >52534 ............................................................ 52593 AC190784.3 >118248 aagacactttaccagatcaatgcaaagtttacacaccttgtccaagatttagtatagcag 118307 AC190890.5 >52594 ............................................................ 52653 AC190784.3 >118308 aagtgataaagatactcaaaaccttcttgaaaacagcataatcaaaaatactggctagtg 118367 AC190890.5 >52654 ............................................................ 52713 AC190784.3 >118368 aacctccgtcccaagcgagaattatcataacctacatgaaacaatcaaaattaaattaaa 118427 AC190890.5 >52714 ............................................................ 52773 AC190784.3 >118428 aacctcaaataacagattagctatacaacatccagctaagatgttaagtaccttcctgta 118487 AC190890.5 >52774 ............................................................ 52833 AC190784.3 >118488 gagtgtttattaaaaaatgcactgaacccttcaaacgtccaaaataatgcagcaaatgct 118547 AC190890.5 >52834 ............................................................ 52893 AC190784.3 >118548 tattgcagaagaaggtaaatataaataaatacctgaagagctaaaataaagaagctccag 118607 AC190890.5 >52894 ............................................................ 52953 AC190784.3 >118608 agtctgtcaaaacttctgaatatgtgccaaaatgagcgtagctcaacgaagttgaccttt 118667 AC190890.5 >52954 ............................................................ 53013 AC190784.3 >118668 cccttctgtttgctgatccttgtgctctgaacagctcattacattagatgttgctagccc 118727 AC190890.5 >53014 ............................................................ 53073 AC190784.3 >118728 aacaaaaacacgaagataccatgatgatatatggtaaaatcctaagctaaaaaacataat 118787 AC190890.5 >53074 ............................................................ 53133 AC190784.3 >118788 ccaactcacttcatttctttcatcaggctgacaaaagaagtcagcatcagctcgcatagg 118847 AC190890.5 >53134 ............................................................ 53193 AC190784.3 >118848 ccaaccaagccgaaagcagtcagcagacctgcaatttaacaatataaaatctaaagagca 118907 AC190890.5 >53194 ............................................................ 53253 AC190784.3 >118908 aacaaataaactaagaaaaaactagtaccagaagtactcattaagatcatcatagtttct 118967 AC190890.5 >53254 ............................................................ 53313 AC190784.3 >118968 ccactcagaatgattccctttctctcttttgctcctttcagcttcctgaaaagttgtagt 119027 AC190890.5 >53314 ............................................................ 53373 AC190784.3 >119028 gaaaaactgaagttcagcaccagaagaagaataaagctcaaccgacacaactgaataaca 119087 AC190890.5 >53374 ............................................................ 53433 AC190784.3 >119088 gtcaagagctgagagcaaaccacctttgctatggtatggtaaatcggtgtaacaactttc 119147 AC190890.5 >53434 ............................................................ 53493 AC190784.3 >119148 ttcagaaaggcttctttctcaccaccataggccggcttcacatattcacccgtcaaggca 119207 AC190890.5 >53494 ............................................................ 53553 AC190784.3 >119208 ctgacatttccagctaacataccatacatttcaaatgccatctatgacaataaccagaac 119267 AC190890.5 >53554 ............................................................ 53613 AC190784.3 >119268 tgtcaggaccatcttcgttacgcttttaacatccaagacaagtacttgcaaaacaaatgt 119327 AC190890.5 >53614 ............................................................ 53673 AC190784.3 >119328 atgactcatgcatttttcttaagaacaaatctgtagccttcttaattcacctattgaact 119387 AC190890.5 >53674 ............................................................ 53733 AC190784.3 >119388 ctgagagcattccatggatacaatattaatttttcgcataaaacttgatagggtccatta 119447 AC190890.5 >53734 ............................................................ 53793 AC190784.3 >119448 tatatgtccgtaatagagcgtatagtcacagtagattgtgctaaaattttaatattagct 119507 AC190890.5 >53794 ............................................................ 53853 AC190784.3 >119508 acctttaaaatgtcgtatttaccaaattagttacatgaatgaactcatccagttgatgcc 119567 AC190890.5 >53854 ............................................................ 53913 AC190784.3 >119568 gctcgagtgttcaaaatttaactattcatccttaagaacatttcttaagtattgatctta 119627 AC190890.5 >53914 ............................................................ 53973 AC190784.3 >119628 atatgcttatttatttaagaaagaaaaaatgaattaatgtaagggagttcatgtgttgtt 119687 AC190890.5 >53974 ............................................................ 54033 AC190784.3 >119688 tagatcgtacatgatgatatatgtagcaaatgcactctggcataaaacgcaagtttgcag 119747 AC190890.5 >54034 ............................................................ 54093 AC190784.3 >119748 cttcaccccaaatgagaaggtacaagcccatatacagtaattttcgttgttgcatctcct 119807 AC190890.5 >54094 ............................................................ 54153 AC190784.3 >119808 gctgaattgttggcaacctattatcaagacagaacaaagaataaacaatgagaagggata 119867 AC190890.5 >54154 ............................................................ 54213 AC190784.3 >119868 aagcaatctactagaacaggtttcacttccttttttaaagatggtactactttggtttta 119927 AC190890.5 >54214 ............................................................ 54273 AC190784.3 >119928 aacttcagtattgggtatcagtgcttaattttcctacttgttacagtaagaaaatgagag 119987 AC190890.5 >54274 ............................................................ 54333 AC190784.3 >119988 acgaaaacaactaatggctataccccctgggttcaactgatttggaatactcactacaga 120047 AC190890.5 >54334 ............................................................ 54393 AC190784.3 >120048 tggggacggattcctcataactcaagtgaaaaggttccttctggtggaaggacaccagca 120107 AC190890.5 >54394 ............................................................ 54453 AC190784.3 >120108 ggctggtcaatgattatagagggattgccatgccaattgcaggggacgaaagaaccttcc 120167 AC190890.5 >54454 ............................................................ 54513 AC190784.3 >120168 tccttttgtcagatgtttggaataatacccacctggcaactgagtttccaaggcttttct 120227 AC190890.5 >54514 ............................................................ 54573 AC190784.3 >120228 cttatgccagaaatcgaaactgcactcttcagcagtatctggcaagcactgatgttcagg 120287 AC190890.5 >54574 ............................................................ 54633 AC190784.3 >120288 aaatgttccacacaccgctttcggttgaagcagttgaagaatataatttgtttcagagca 120347 AC190890.5 >54634 ............................................................ 54693 AC190784.3 >120348 aaattcactctcttgtaagcgggatgcacggaaatgattcatggctggttgggggtggct 120407 AC190890.5 >54694 ............................................................ 54753 AC190784.3 >120408 cttttgaaactgagaaagtctacagacggaattttcaatgcatttgcccccacccaccca 120467 AC190890.5 >54754 ............................................................ 54813 AC190784.3 >120468 cccacccccccctcctttcaaatggatatggaaatccaagatgtgcaagaatgatcaaaa 120527 AC190890.5 >54814 ............................................................ 54873 AC190784.3 >120528 ttttcatttggttatttttcatggatagacttaattctagaaatatgcttaaaagaagaa 120587 AC190890.5 >54874 ............................................................ 54933 AC190784.3 >120588 atttcccggtggagggaggtgactactgctgtgtcatgtgccgcttgtggtgtgaagaga 120647 AC190890.5 >54934 ............................................................ 54993 AC190784.3 >120648 caacttagcactcgttttttcaatgccaatatagcaatgcgtgttgggaatatctgggga 120707 AC190890.5 >54994 ............................................................ 55053 AC190784.3 >120708 tcaattggaaccactcggagagtttctttcagatgttggaaaaaggccagagattctttt 120767 AC190890.5 >55054 ............................................................ 55113 AC190784.3 >120768 ggactccctttcttcatggaaattttttcagtggcagattgagagatttggaaggaaaga 120827 AC190890.5 >55114 ............................................................ 55173 AC190784.3 >120828 aataaaaaaaatctttagccaaaatgagtgagatgacccatcccaaggggggcagaatgc 120887 AC190890.5 >55174 ............................................................ 55233 AC190784.3 >120888 tatgccaaaatttttttttttgggaaaacgcaggagaactgcgcctcaatatattaagaa 120947 AC190890.5 >55234 ............................................................ 55293 AC190784.3 >120948 gaagagataaatccagatcaaagagatctggacaaattacaaggcctcctcatgggggcc 121007 AC190890.5 >55294 ............................................................ 55353 AC190784.3 >121008 agaaacacagcaaactgaaaaaatccatcaaactaaacaactccctagtctccaggaatt 121067 AC190890.5 >55354 ............................................................ 55413 AC190784.3 >121068 agggcagcaaggtatgaaagacccttagccccagccatctcccaagactgcctctcctcc 121127 AC190890.5 >55414 ............................................................ 55473 AC190784.3 >121128 ctggctaaattaatggacagatctaaactaggagtacaaccatcaaaaacacaactatta 121187 AC190890.5 >55474 ............................................................ 55533 AC190784.3 >121188 cgatgcttccaggttatccaagctcctaaggccacaagagaattaagacctttaccacgg 121247 AC190890.5 >55534 ............................................................ 55593 AC190784.3 >121248 ataccagaagccaacccagaaatctgctcccaccaagccataaatgaagaatgtccaggc 121307 AC190890.5 >55594 ............................................................ 55653 AC190784.3 >121308 tggggagccagtctctgaaacccaaacggtttaagaatagtaaaccagaatactcttgtg 121367 AC190890.5 >55654 ............................................................ 55713 AC190784.3 >121368 aacacacaggagacgaggatgtgatcaatagtttcagcttcctggtcacaaaagaggcac 121427 AC190890.5 >55714 ............................................................ 55773 AC190784.3 >121428 ctagctggatgatctaagcctctcttcgcaagcctgtcagcggtccagcatcttttgtta 121487 AC190890.5 >55774 ............................................................ 55833 AC190784.3 >121488 gcaaccagccaaagaaagaaccgacactttggaggtgcccaggttttccaaatcaggtga 121547 AC190890.5 >55834 ............................................................ 55893 AC190784.3 >121548 tagagaccaaaggacgttgacccagcaaagaggccctcataagccgacttagccgaatat 121607 AC190890.5 >55894 ............................................................ 55953 AC190784.3 >121608 ttaccatctgctgcaatactaaaaatgtgcttatcctccacttcaggctgcaacaccatt 121667 AC190890.5 >55954 ............................................................ 56013 AC190784.3 >121668 tctgaaagaagctcccaaagattcagataatccactagaactcccacagacagagcaccc 121727 AC190890.5 >56014 ............................................................ 56073 AC190784.3 >121728 tttatatcagatatccattttctgttggcaagagcttcaagcacagttcttctatttgca 121787 AC190890.5 >56074 ............................................................ 56133 AC190784.3 >121788 atccttttaggaatgatggcgaataacctaggcgccagactacacacattctgccccaag 121847 AC190890.5 >56134 ............................................................ 56193 AC190784.3 >121848 atccatttatctgtccaaaacagagtgtgtgctccatttccaaccttagagaccaaaaca 121907 AC190890.5 >56194 ............................................................ 56253 AC190784.3 >121908 gtggagaagaaagcttctgccttttttggaacttggatagggagattagcccaaggtttt 121967 AC190890.5 >56254 ............................................................ 56313 AC190784.3 >121968 ccaggatcagttttatgaagccataaccatctcatacgaagggcccagcaaagttccttt 122027 AC190890.5 >56314 ............................................................ 56373 AC190784.3 >122028 aaactagaaatacccagccctcccaaatggaggggtctgcacacccttccccaagcaacc 122087 AC190890.5 >56374 ............................................................ 56433 AC190784.3 >122088 agacaatgtcctcccctgacttccttgcggcctttccaaagaaaaccctttctaatttta 122147 AC190890.5 >56434 ............................................................ 56493 AC190784.3 >122148 tcaattgcctccaaagcccattgaggaaaatcaatggccatagccaaatatatgatcata 122207 AC190890.5 >56494 ............................................................ 56553 AC190784.3 >122208 ctggagagcacatgctgaaccataatcttcctaccggctctagtcataagatcagctttc 122267 AC190890.5 >56554 ............................................................ 56613 AC190784.3 >122268 caactcggaagacggtcggccaccctgtctatgatagattgaatctgttctctggtcagc 122327 AC190890.5 >56614 ............................................................ 56673 AC190784.3 >122328 ttatgaagggagagtggaattccaagatatttgcaagggaattcagacctctcaaaaggc 122387 AC190890.5 >56674 ............................................................ 56733 AC190784.3 >122388 aataaattctggaccagcacaaggtcatccgtagggcactggatgggaaaaacattagat 122447 AC190890.5 >56734 ............................................................ 56793 AC190784.3 >122448 ttctgctcattgttgcggagcccagacgcctttccaaacaaatccaagatatttaatgta 122507 AC190890.5 >56794 ............................................................ 56853 AC190784.3 >122508 gtggaaatgtcagcagccgagggcctcaaaaatatgacaacatcatcagcatacatagag 122567 AC190890.5 >56854 ............................................................ 56913 AC190784.3 >122568 atccggtggagattaaccctgtccgacaggcgctgcaataaacctgcatcctcggcccta 122627 AC190890.5 >56914 ............................................................ 56973 AC190784.3 >122628 gtaaatagcagggccaaaatgtccattaccaagataaaaagcattggggaaagagggtcg 122687 AC190890.5 >56974 ............................................................ 57033 AC190784.3 >122688 ccttgccgaagacctcttctgtgaataatcttcctccccaaaaaaccattaagaaggacc 122747 AC190890.5 >57034 ............................................................ 57093 AC190784.3 >122748 tgagtagacgaagaggccaacagtccacagataatatccctccaaagctgtccaaaccca 122807 AC190890.5 >57094 ............................................................ 57153 AC190784.3 >122808 agctgcgccaatacctcaataagaaaaggccacgagaccgaatcgaaggccttggtgatg 122867 AC190890.5 >57154 ............................................................ 57213 AC190784.3 >122868 tccaatttgagaagcaaactggccttcttctggcgatgaaggaatctggaagtctgctgc 122927 AC190890.5 >57214 ............................................................ 57273 AC190784.3 >122928 accagcatgaagttatcttgaataaaccgccccttgatgaaggcactctgatttggagaa 122987 AC190890.5 >57274 ............................................................ 57333 AC190784.3 >122988 atcagcctgttaagcttgctagccagcctgttggcaagaatctttgtaatcagcttgccg 123047 AC190890.5 >57334 ............................................................ 57393 AC190784.3 >123048 aaactgtgcacaaggcttattggcctaaaatccttcacatgttcagcccctctttttttg 123107 AC190890.5 >57394 ............................................................ 57453 AC190784.3 >123108 ggatcaaggtaatgtaagcagaattcaacttgtcaaaattaacaaagttattattccaga 123167 AC190890.5 >57454 ............................................................ 57513 AC190784.3 >123168 cagcatgagtagcagccatgatatcagatttgataacggtccagcaggacttataaaaac 123227 AC190890.5 >57514 ............................................................ 57573 AC190784.3 >123228 atccagtaaatccatccggccccggcgctttatcagaaggtaaaagcttaatggtatccc 123287 AC190890.5 >57574 ............................................................ 57633 AC190784.3 >123288 atagttccctttccgaacagggagcctcaagcgcagccaaatcatgctgagaaaggccaa 123347 AC190890.5 >57634 ............................................................ 57693 AC190784.3 >123348 gggcctccaaatccactgcttgctctctgtcccagcatgaaccaattaagtttgaaaaga 123407 AC190890.5 >57694 ............................................................ 57753 AC190784.3 >123408 aaccatccactgctgcagccttgtccctatggctagtaaggatatcatccccatcaacca 123467 AC190890.5 >57754 ............................................................ 57813 AC190784.3 >123468 acgtagcaataaaattctttctcttacggtgtttggcatgcaggtggaagaatttcgtgt 123527 AC190890.5 >57814 ............................................................ 57873 AC190784.3 >123528 tggcatcaccatccttgagccacaaaatccttgatctcatcctagccatagtacgcttca 123587 AC190890.5 >57874 ............................................................ 57933 AC190784.3 >123588 gggaggataaaagcaaagaatgttttttaagcttgcctttcagccaaaattcatccggag 123647 AC190890.5 >57934 ............................................................ 57993 AC190784.3 >123648 tcaacaccctttcatcctgagcaatttccagcttatgagaaatttcttttgccaaagcta 123707 AC190890.5 >57994 ............................................................ 58053 AC190784.3 >123708 gttgagatctaatgtgaccaacctgcctatcactccaagcttgcaacctcctggctgtct 123767 AC190890.5 >58054 ............................................................ 58113 AC190784.3 >123768 tcttcagtttatagtggagagtgaggaaaggacagttcgttgtaccaactgagtcccagg 123827 AC190890.5 >58114 ............................................................ 58173 AC190784.3 >123828 catcgcgtacagtatcatgaaatccctccaatttaggccaaaaagcctcaaaatgaaaac 123887 AC190890.5 >58174 ............................................................ 58233 AC190784.3 >123888 gtcgactccctgatatattatctcgaagacccagaattaatgggcaatgatcagagtctt 123947 AC190890.5 >58234 ............................................................ 58293 AC190784.3 >123948 gggaagcagaactctgcagcagcacatcagggaaaagaaactcccagtcaactgagcata 124007 AC190890.5 >58294 ............................................................ 58353 AC190784.3 >124008 ggactctgtccaatctgaccagaacgggctccatttgttgatttgaccaagtaaaacgcc 124067 AC190890.5 >58354 ............................................................ 58413 AC190784.3 >124068 gaccatggagaggaatttctttaaggtcgagatcattgataaatcgcctaaaccttccca 124127 AC190890.5 >58414 ............................................................ 58473 AC190784.3 >124128 tcatagctctgctgaaattgttgttgttcttgtcagaggctttgtagattaagttgaagt 124187 AC190890.5 >58474 ............................................................ 58533 AC190784.3 >124188 ccccagcaacaacccaaggaccattgcagccctctcttacatttcttagctcctgcagaa 124247 AC190890.5 >58534 ............................................................ 58593 AC190784.3 >124248 aagagatcttctcatcatccccttggggaccataaacacaggttaaccaccaggtacctc 124307 AC190890.5 >58594 ............................................................ 58653 AC190784.3 >124308 cttcttgcttatggaactgaatggagacactgtgattatcaattctgctcgcacctgtga 124367 AC190890.5 >58654 ............................................................ 58713 AC190784.3 >124368 atctcaaatgatttttccaggccaccagaattcctccactggctccaatcgaaggcaaga 124427 AC190890.5 >58714 ............................................................ 58773 AC190784.3 >124428 agacatattcagaaaattcagcgcccaaaacagaaattaaggtgctactagcaatagatt 124487 AC190890.5 >58774 ............................................................ 58833 AC190784.3 >124488 gcatcttagtttcctgcaaacataccacctcagccttaacggacagagctaattctctaa 124547 AC190890.5 >58834 ............................................................ 58893 AC190784.3 >124548 cagaatcttgacgagcacgagaattgagacctcgcacattccaaataagaattttggatg 124607 AC190890.5 >58894 ............................................................ 58953 AC190784.3 >124608 gatccattaagaaacacagtttacatcaccaaccagaaaacaacacccttattgaagggg 124667 AC190890.5 >58954 ............................................................ 59013 AC190784.3 >124668 aaccaacacaggggctctccacccaaacagggcagcaagagcctccacctcactacggat 124727 AC190890.5 >59014 ............................................................ 59073 AC190784.3 >124728 cagggggcgcttgaaaaactgagtatattcatccaaggcttcctgactaattccctcatt 124787 AC190890.5 >59074 ............................................................ 59133 AC190784.3 >124788 ctcggagataatatgcagggatctcatgactttcctggtagttctacctcccaggtcaag 124847 AC190890.5 >59134 ............................................................ 59193 AC190784.3 >124848 gagattaaattccactccaactcccgcaacacggcgacttcttcttggcatgggagcagc 124907 AC190890.5 >59194 ............................................................ 59253 AC190784.3 >124908 aggcggggaaggtggaggatcaacgtgcggatcaactcgcggaacaggaagaatcccaga 124967 AC190890.5 >59254 ............................................................ 59313 AC190784.3 >124968 agaatacttggagattccattgaagaactcttgatttctggcttcaaagctt 125019 AC190890.5 >59314 .................................................... 59365
Events
| Id | Type | Date | Whodid | Comment |
| 295546 | InitHasAlign | 01/15/2014 17:24:50 | cgi_chen | find_overlapId: find_overlap_app.cpp 404199 2013-06-20 22:08:27Z rafanovi $ built Aug 1 2013. Toolkit wrapper using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib Info: Blast Including ID: 545480919 Info: Running Blast Filter: 0 Info: Determined ID: gi|545480919 needs Merging. Info: Blast Including ID: 545480919 Info: Running Blast Filter: 0 Info: Determined ID: gi|545480919 needs Merging. Info: Blast Including ID: 545480919 Info: Running Blast Filter: 0 Info: Determined ID: gi|545480919 needs Merging. Info: Best Rank: 13 in for 545480919 of 1 Info: NG returned 1 alignments tpf_solo for TPF_updated_1_v2 |
BAC Ends
| Clone | R | F | ||||
|---|---|---|---|---|---|---|
| Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
| CH201-103I11 | AC190784.3 | 100% | pos 36035 (R+) | AC190890.5 | 100% | pos 111331 (F-) |
| CH201-103K11 | AC190890.5 | 100% | pos 111004 (F-) | |||
| CH201-13B2 | AC190784.3 | 97.79% | pos 122057 (R-) | |||
| AC190890.5 | 97.79% | pos 56403 (R-) | ||||
| CH201-160K8 | AC190890.5 | 99.85% | pos 872 (F-) | |||
| AC190784.3 | 98.45% | pos 99555 (F+) | ||||
| AC190784.3 | 99.85% | pos 99612 (F+) | ||||
| AC190890.5 | 98.45% | pos 1402 (F-) | ||||
| CH201-171B14 | AC190784.3 | 99.6% | pos 88177 (F-) | |||
| AC190890.5 | 99.08% | pos 12535 (F+) | ||||
| AC190890.5 | 99.6% | pos 12724 (F+) | ||||
| AC190784.3 | 99.08% | pos 88399 (F-) | ||||
| CH201-177D21 | AC190890.5 | 99.61% | pos 990 (F-) | |||
| AC190890.5 | 100% | pos 1403 (F-) | ||||
| AC190784.3 | 99.61% | pos 99906 (F+) | ||||
| AC190784.3 | 100% | pos 99555 (F+) | ||||
| AC190784.3 | 100% | pos 99616 (F+) | ||||
| AC190890.5 | 100% | pos 945 (F-) | ||||
| CH201-178C21 | AC190890.5 | 99.84% | pos 1050 (F-) | |||
| AC190890.5 | 100% | pos 1254 (F-) | ||||
| AC190890.5 | 100% | pos 1402 (F-) | ||||
| AC190784.3 | 99.84% | pos 99490 (F+) | ||||
| AC190784.3 | 100% | pos 99541 (F+) | ||||
| AC190890.5 | 100% | pos 1278 (F-) | ||||
| AC190784.3 | 100% | pos 99614 (F+) | ||||
| AC190784.3 | 100% | pos 99614 (F+) | ||||
| CH201-219G4 | AC190784.3 | 100% | pos 99491 (R+) | |||
| AC190784.3 | 100% | pos 99655 (R+) | ||||
| AC190890.5 | 100% | pos 959 (R-) | ||||
| AC190890.5 | 100% | pos 1415 (R-) | ||||
| CH201-225A9 | AC190890.5 | 100% | pos 12660 (R+) | |||
| AC190784.3 | 100% | pos 88137 (R-) | ||||
| CH201-230H6 | AC190890.5 | 100% | pos 954 (F-) | |||
| AC190784.3 | 100% | pos 99542 (F+) | ||||
| CH201-290J7 | AC190890.5 | 100% | pos 5631 (F-) | |||
| AC190890.5 | 100% | pos 5218 (F-) | ||||
| AC190784.3 | 100% | pos 95306 (F+) | ||||
| AC190784.3 | 100% | pos 95373 (F+) | ||||
| CH201-309O13 | AC190890.5 | 99.71% | pos 75678 (F+) | |||
| CH201-33L12 | AC190890.5 | 98.3% | pos 143189 (F-) | |||
| CH201-379N13 | AC190890.5 | 100% | pos 148262 (F-) | |||
| CH201-43L16 | AC190890.5 | 100% | pos 56829 (F+) | |||
| AC190890.5 | 99.07% | pos 56891 (F+) | ||||
| AC190784.3 | 100% | pos 122483 (F+) | ||||
| AC190784.3 | 99.07% | pos 122545 (F+) | ||||
| CH201-485E16 | AC190890.5 | 100% | pos 499 (F-) | |||
| AC190784.3 | 100% | pos 100359 (F+) | ||||
| CH201-489F2 | AC190784.3 | 99.62% | pos 58573 (F+) | |||
| AC190784.3 | 100% | pos 58275 (F+) | ||||
| CH201-52D8 | AC190784.3 | 100% | pos 99565 (R+) | |||
| AC190890.5 | 100% | pos 1369 (R-) | ||||
| CH201-560M1 | AC190890.5 | 100% | pos 4393 (F-) | |||
| AC190784.3 | 100% | pos 96612 (F+) | ||||
| CH201-561A11 | AC190784.3 | 99.52% | pos 37521 (F+) | |||
| AC190784.3 | 100% | pos 37635 (F+) | ||||
| CH201-562N1 | AC190890.5 | 100% | pos 4404 (F-) | |||
| AC190784.3 | 100% | pos 96685 (F+) | ||||
| CH201-567F15 | AC190784.3 | 100% | pos 96229 (F+) | |||
| AC190890.5 | 100% | pos 4778 (F-) | ||||
| CH201-69J24 | AC190890.5 | 100% | pos 11101 (F+) | |||
| AC190784.3 | 100% | pos 89319 (F-) | ||||
| CH201-97P10 | AC190890.5 | 100% | pos 156407 (F-) | |||
| CH201-99C23 | AC190890.5 | 99.67% | pos 990 (R-) | |||
| AC190784.3 | 99.67% | pos 99562 (R+) | ||||
| ZMMBBb-141J19 | AC190890.5 | 97.31% | pos 87549 (R-) | |||
| ZMMBBb-144L22 | AC190890.5 | 98.12% | pos 160520 (R+) | |||
| ZMMBBb-195M22 | AC190890.5 | 99.39% | pos 156161 (R-) | AC190890.5 | 99.85% | pos 49973 (F+) |
| AC190784.3 | 99.85% | pos 115627 (F+) | ||||
| ZMMBBb-233B17 | AC190784.3 | 99.75% | pos 95118 (R-) | |||
| AC190890.5 | 99.75% | pos 5239 (R+) | ||||
| ZMMBBb-237K19 | AC190890.5 | 99.25% | pos 59366 (F+) | |||
| ZMMBBb-262B11 | AC190890.5 | 99.8% | pos 152367 (F-) | |||
| ZMMBBb-272J1 | AC190784.3 | 99.26% | pos 52997 (F+) | |||
| ZMMBBb-399C7 | AC190890.5 | 99.5% | pos 57024 (R-) | |||
| AC190784.3 | 99.5% | pos 122678 (R-) | ||||
| ZMMBBb-418M17 | AC190784.3 | 98.95% | pos 122682 (R-) | |||
| AC190890.5 | 98.95% | pos 57028 (R-) | ||||
| ZMMBBb-420L4 | AC190784.3 | 99.07% | pos 38969 (F+) | |||
| ZMMBBb-448P23 | AC190890.5 | 99.21% | pos 156532 (F+) | |||
| AC190890.5 | 99.49% | pos 156459 (F+) | ||||
| AC190890.5 | 99.83% | pos 156461 (F+) | ||||
| ZMMBBb-485M1 | AC190890.5 | 97.78% | pos 106905 (F+) | |||
| ZMMBBb-490I19 | AC190890.5 | 98.04% | pos 35132 (R-) | |||
| AC190784.3 | 98.04% | pos 65998 (R+) | ||||
| ZMMBBb-504M2 | AC190890.5 | 97.69% | pos 156445 (F+) | |||
| ZMMBBb-518C23 | AC190784.3 | 100% | pos 124333 (R-) | AC190784.3 | 100% | pos 7 (F+) |
| AC190890.5 | 100% | pos 58679 (R-) | AC190784.3 | 100% | pos 170 (F+) | |
| ZMMBBb-545H18 | AC190784.3 | 97.76% | pos 96215 (R-) | |||
| AC190890.5 | 97.76% | pos 4667 (R+) | ||||
| ZMMBBb-554K9 | AC190784.3 | 97.13% | pos 57422 (R-) | |||
Fosmid Ends
| Clone | R | F | ||||
|---|---|---|---|---|---|---|
| Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
| Z_AI-1045I4 | AC190890.5 | 99.84% | pos 27319 (F-) | |||
| AC190784.3 | 99.84% | pos 73209 (F+) | ||||
| Z_AI-1188G1 | AC190784.3 | 100% | pos 41167 (R+) | |||
| Z_AI-1189A24 | AC190784.3 | 100% | pos 41156 (R+) | |||
| Z_AI-1219L14 | AC190890.5 | 100% | pos 108783 (R-) | |||
| Z_AI-1243G15 | AC190784.3 | 100% | pos 37705 (R-) | |||
| Z_AI-1257K11 | AC190890.5 | 100% | pos 40718 (R-) | |||
| Z_AI-1275E1 | AC190784.3 | 100% | pos 50457 (R+) | AC190890.5 | 99.45% | pos 14594 (F-) |
| AC190784.3 | 99.45% | pos 85833 (F+) | ||||
| Z_AI-1336B5 | AC190890.5 | 100% | pos 32223 (R-) | |||
| AC190784.3 | 100% | pos 68201 (R+) | ||||
| Z_AI-1412A15 | AC190890.5 | 99.48% | pos 70887 (R-) | |||
| Z_AI-1416O13 | AC190890.5 | 98.73% | pos 157840 (F-) | |||
| Z_AI-1461F5 | AC190890.5 | 100% | pos 108217 (R-) | |||
| Z_AI-1477D23 | AC190890.5 | 100% | pos 6032 (F-) | |||
| AC190784.3 | 100% | pos 95065 (F+) | ||||
| Z_AI-255D4 | AC190784.3 | 98.18% | pos 84247 (F-) | |||
| AC190890.5 | 98.18% | pos 16849 (F+) | ||||
| Z_AI-25N12 | AC190784.3 | 99.78% | pos 41595 (F-) | |||
| Z_AI-274C20 | AC190784.3 | 100% | pos 73971 (R+) | AC190784.3 | 99.86% | pos 50510 (F+) |
| AC190890.5 | 100% | pos 26600 (R-) | ||||
| Z_AI-291A12 | AC190890.5 | 100% | pos 41100 (R-) | |||
| Z_AI-304I5 | AC190890.5 | 99.39% | pos 58319 (F-) | |||
| AC190784.3 | 99.39% | pos 123973 (F-) | ||||
| Z_AI-323L16 | AC190784.3 | 98.54% | pos 96325 (R+) | |||
| AC190890.5 | 98.54% | pos 4688 (R-) | ||||
| Z_AI-361P3 | AC190784.3 | 100% | pos 74920 (R-) | AC190890.5 | 99.16% | pos 62049 (F-) |
| AC190890.5 | 100% | pos 26052 (R+) | ||||
| Z_AI-374D3 | AC190890.5 | 98.69% | pos 5568 (R-) | |||
| AC190784.3 | 98.69% | pos 94968 (R+) | ||||
| Z_AI-376C23 | AC190890.5 | 99.85% | pos 33326 (F-) | |||
| AC190784.3 | 99.85% | pos 67141 (F+) | ||||
| Z_AI-404N7 | AC190784.3 | 99.86% | pos 56490 (R+) | |||
| Z_AI-406G23 | AC190890.5 | 98.73% | pos 37239 (R+) | |||
| AC190784.3 | 98.73% | pos 64449 (R-) | ||||
| Z_AI-421D4 | AC190890.5 | 99.87% | pos 114720 (R-) | |||
| Z_AI-421D8 | AC190890.5 | 100% | pos 114736 (R-) | |||
| Z_AI-495D10 | AC190784.3 | 100% | pos 48155 (R+) | AC190784.3 | 100% | pos 87269 (F+) |
| AC190890.5 | 100% | pos 13308 (F-) | ||||
| Z_AI-566M7 | AC190784.3 | 100% | pos 1913 (F+) | |||
| Z_AI-607C11 | AC190784.3 | 100% | pos 51060 (R-) | |||
| Z_AI-620E12 | AC190890.5 | 100% | pos 164498 (F+) | |||
| Z_AI-692P11 | AC190890.5 | 99.72% | pos 73178 (F+) | |||
| Z_AI-704B11 | AC190890.5 | 100% | pos 16225 (R+) | AC190890.5 | 99.32% | pos 56024 (F-) |
| AC190784.3 | 100% | pos 84445 (R-) | AC190784.3 | 99.32% | pos 121678 (F-) | |
| Z_AI-706C14 | AC190890.5 | 99.81% | pos 94804 (R+) | |||
| Z_AI-711D9 | AC190890.5 | 99.36% | pos 143982 (R-) | |||
| Z_AI-73I12 | AC190890.5 | 100% | pos 78212 (F+) | |||
| Z_AI-740L16 | AC190890.5 | 99.85% | pos 38913 (R-) | |||
| Z_AI-754C20 | AC190890.5 | 100% | pos 112607 (R+) | AC190890.5 | 99.86% | pos 148135 (F-) |
| Z_AI-831L2 | AC190890.5 | 100% | pos 60865 (F+) | |||
| Z_AI-841J11 | AC190890.5 | 100% | pos 17396 (R-) | AC190784.3 | 100% | pos 48519 (F+) |
| AC190784.3 | 100% | pos 83090 (R+) | ||||
| Z_AI-859H23 | AC190784.3 | 100% | pos 95606 (R+) | |||
| AC190890.5 | 100% | pos 4822 (R-) | ||||
| Z_AI-877H10 | AC190890.5 | 99.53% | pos 23185 (R-) | AC190784.3 | 99.5% | pos 56466 (F+) |
| AC190784.3 | 99.86% | pos 77402 (R+) | ||||
| AC190890.5 | 99.86% | pos 23033 (R-) | ||||
| AC190784.3 | 99.53% | pos 77753 (R+) | ||||
| Z_AI-992L13 | AC190890.5 | 98.06% | pos 56000 (F+) | |||
| AC190784.3 | 98.06% | pos 121654 (F+) | ||||
Repeats
| acc | start | stop | repeat id | strand | name | family | class |
|---|