Alignment last updated: 11/11/2008 11:57:38
Join Legend
Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.6%
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.6%
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.
Alignment for AC020763.6 and AC027281.10
Download Genome Workbench
Swap Rows Rotate Orientations
Swap Rows Rotate Orientations
AC020763.6 Homo sapiens chromosome 16 clone RP11-394B2, complete sequence [htgs_phase3]
Length: 200,838 bp
AC027281.10 Homo sapiens chromosome 16 clone RP11-424M24, complete sequence [htgs_phase3]
Length: 221,210 bp
Alignment Summary
Join evaluation: Alignment count: 1
|
| Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time | Id | Alignment | Releases |
| L | 1 | 481 | - | + | chenhc | Taxid 9606 chrom 16 Primary assembly | 2008-08-08 12:39:09.123 | 20846 | 37699 | GRCh38, GRCh37, Hs36 |
| A | 1 | 481 | - | + | chenhc | Taxid 9606 chrom 16 Primary assembly | 2008-11-11 11:57:38.663 | 46499 | 37699 |
Alignment 1 of 1
AC020763.6 : - : 480..1 AC027281.10 : + : 1..480 Mismatches = 0, Gaps = 0, Length = 480 Percent identity = 100% Score = 952 bits (480), Expect = 0 3 BAC and 99 Fosmid bridging clones. 3 BAC and 99 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AC020763.6 <480 gaattctatctcaataaagggcttaaaaaatgactttggggaaaggactgtgactgcact 421 AC027281.10 >1 ............................................................ 60 AC020763.6 <420 gtgtctgtgcccgagtcttcctccaagtggccaactcaatacctgtcttagtatttaact 361 AC027281.10 >61 ............................................................ 120 AC020763.6 <360 taccatcatataacccagggtagaaaagcatctacctggcatcgactacttatttttctc 301 AC027281.10 >121 ............................................................ 180 AC020763.6 <300 agttaaggaataacctttaaattccaacctttttcttttggcatctaatcaagtttccta 241 AC027281.10 >181 ............................................................ 240 AC020763.6 <240 aagagccaagatgttctagatctggaaagctgctggtaggatcctgttccgccttcagtc 181 AC027281.10 >241 ............................................................ 300 AC020763.6 <180 cccgtctaggcactggccacagctctcactgcactgaggagggaagagggggctggcagt 121 AC027281.10 >301 ............................................................ 360 AC020763.6 <120 cctgcagtgcttggggtgggaggtgctataggaaaaaattccagactcctgatactaatt 61 AC027281.10 >361 ............................................................ 420 AC020763.6 <60 ttttgtagttgtgaaataattttagatgtacagaaaagttgcaaaaagagtaaagaattc 1 AC027281.10 >421 ............................................................ 480
Events
| Id | Type | Date | Whodid | Comment |
| 57248 | InitHasAlign | 09/29/2006 16:17:21 | jcherry | blast parameters: -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R' bandwidths: 501 701 1001 5001 Toolkit wrapper version: built Thu Aug 17 17:58:09 EDT 2006 using /netopt/ncbi_tools/c++.by-date/production/20060730 Running blast for AC020763.6 and AC027281.10 Found 1 acceptable dovetail alignment(s) by blast -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R' |
| 131603 | CreateSwitchPt | 08/08/2008 12:39:09 | chenhc | From Hs build 36.1 agp files |
| 157256 | CreateSwitchPt | 11/11/2008 11:57:38 | chenhc | contig_builder 1.3 Toolkit wrapper version: built Nov 10 2008 using /netopt/ncbi_tools64/c++.by-date/20081110/GCC401-Release64/lib |
Repeats
Too repeats, not showing repeat table.