PMC

SGP data flow. The SGP data resource includes sequence processing and annotation pipelines, project and publicly available tools, and the project database.

Clustered data summary menu. "Contigs and best annotation hits" display for the SGP dataset. Similar results display – "Singlets and best annotation hits" is available for singlets. Other options are "Contigs length and number of reads" and "Distribution of average length and number of reads in contigs". The Clustered data summary provides a current snapshot of the SGP database.

GO-GOA automatic annotation results. Upper level GO categories assignments, and the breakdown for each subset are shown for the three GO subsets, [GO: Molecular Function], [GO: Biological Process] and [GO: Cellular Component]. The annotation was performed for contig and singlet sequences. Complete SGP GO-GOA annotation is available at SGP data resource > Data and results > Annotations > SGP full annotation > GO term tables.

Clustered data datasets menu gives access to dataset descriptions, and full sets of contigs and singlets sequences and automatic annotation results for each dataset. Searches in the SGP database run on the three linked categories of data: sequences including their descriptions, libraries and annotations. When a match occurs in any of these data, all three data categories are shown in results. The "Matches in datasets" display provides access to a subset of contigs, singlets and annotations selected in the search. The "Annotations best hits" display is the same for the Clustered data datasets menu and database search results. Clustered data datasets menu provides a current snapshot of the SGP database.

Detailed automatic annotations display shows results of the GO – GOA and NCBI BLAST annotations. Query and target sequences and complete BLAST results can be accessed from this page. Access to the detailed automatic annotations display for the full SGP annotation is available from SGP data resource > Data and results > Annotations > SGP full annotation. Links to the detailed annotation for the specific contig and singlet sequences are provided in the Annotation best hits display and for sequences accessed from the Clustered data datasets display and SGP database search results. Explanation of the format including BLAST parameters, table columns and colour coding is given at the top of each annotation page.