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PMC Full-Text Search Results

Items: 1 to 20 of 2613

1.
An Evaluation Framework and Comparative Analysis of the Widely Used First Programming Languages
Muhammad Shoaib Farooq, Sher Afzal Khan, Farooq Ahmad, Saeed Islam, Adnan Abid
PLoS One. 2014; 9(2): e88941. Published online 2014 Feb 24. doi: 10.1371/journal.pone.0088941
PMCID:
PMC3933420
AbstractArticlePDF–1.2M
2.
The C++ programming language in cheminformatics and computational chemistry
Dmitrii Rassokhin
J Cheminform. 2020; 12: 10. Published online 2020 Feb 7. doi: 10.1186/s13321-020-0415-y
PMCID:
PMC7006409
AbstractArticlePDF–1.2M
3.
Evolvix BEST Names for semantic reproducibility across code2brain interfaces
Laurence Loewe, Katherine S. Scheuer, Seth A. Keel, Vaibhav Vyas, Ben Liblit, Bret Hanlon, Michael C. Ferris, John Yin, Inês Dutra, Anthony Pietsch, Christine G. Javid, Cecilia L. Moog, Jocelyn Meyer, Jerdon Dresel, Brian McLoone, Sonya Loberger, Arezoo Movaghar, Morgaine Gilchrist‐Scott, Yazeed Sabri, Dave Sescleifer, Ivan Pereda‐Zorrilla, Andrew Zietlow, Rodrigo Smith, Samantha Pietenpol, Jacob Goldfinger, Sarah L. Atzen, Erika Freiberg, Noah P. Waters, Claire Nusbaum, Erik Nolan, Alyssa Hotz, Richard M. Kliman, Ayalew Mentewab, Nathan Fregien, Martha Loewe
Ann N Y Acad Sci. 2017 Jan; 1387(1): 124–144. Published online 2016 Dec 5. doi: 10.1111/nyas.13192
PMCID:
PMC5299481
AbstractArticlePDF–1.3M
4.
Informatics Technology Mimics Ecology: Dense, Mutualistic Collaboration Networks Are Associated with Higher Publication Rates
Marco D. Sorani
PLoS One. 2012; 7(1): e30463. Published online 2012 Jan 18. doi: 10.1371/journal.pone.0030463
PMCID:
PMC3261203
AbstractArticlePDF–597K
5.
Julia for Biologists
Elisabeth Roesch, Joe G. Greener, Adam L. MacLean, Huda Nassar, Christopher Rackauckas, Timothy E. Holy, Michael P.H. Stumpf
Nat Methods. Author manuscript; available in PMC 2023 Nov 1.
Published in final edited form as: Nat Methods. 2023 May; 20(5): 655–664. Published online 2023 Apr 6. doi: 10.1038/s41592-023-01832-z
Correction in:
Nat Methods. 2023 Apr 29
PMCID:
PMC10216852
AbstractArticlePDF–2.4M
6.
Python as a Federation Tool for GENESIS 3.0
Hugo Cornelis, Armando L. Rodriguez, Allan D. Coop, James M. Bower
PLoS One. 2012; 7(1): e29018. Published online 2012 Jan 20. doi: 10.1371/journal.pone.0029018
PMCID:
PMC3262781
AbstractArticlePDF–714K
7.
A Project Based Learning Approach for Improving Students’ Computational Thinking Skills
Francesca Bertacchini, Carmelo Scuro, Pietro Pantano, Eleonora Bilotta
Front Robot AI. 2022; 9: 720448. Published online 2022 Mar 7. doi: 10.3389/frobt.2022.720448
PMCID:
PMC8942779
AbstractArticlePDF–5.7M
8.
Composable languages for bioinformatics: the NYoSh experiment
Manuele Simi, Fabien Campagne
PeerJ. 2014; 2: e241. Published online 2014 Jan 2. doi: 10.7717/peerj.241
PMCID:
PMC3898313
AbstractArticlePDF–2.4M
9.
Universal probabilistic programming offers a powerful approach to statistical phylogenetics
Fredrik Ronquist, Jan Kudlicka, Viktor Senderov, Johannes Borgström, Nicolas Lartillot, Daniel Lundén, Lawrence Murray, Thomas B. Schön, David Broman
Commun Biol. 2021; 4: 244. Published online 2021 Feb 24. doi: 10.1038/s42003-021-01753-7
Correction in:
Commun Biol. 2021; 4: 354.
PMCID:
PMC7904853
AbstractArticlePDF–779K
10.
Formal representation of ambulatory assessment protocols in HTML5 for human readability and computer execution
Nikolaos Batalas, Vassilis-Javed Khan, Minita Franzen, Panos Markopoulos, Marije aan het Rot
Behav Res Methods. 2019; 51(6): 2761–2776. Published online 2018 Nov 7. doi: 10.3758/s13428-018-1148-y
PMCID:
PMC6877491
AbstractArticlePDF–1.2M
11.
Identifying middle school students’ challenges in computational thinking-based science learning
Satabdi Basu, Gautam Biswas, Pratim Sengupta, Amanda Dickes, John S. Kinnebrew, Douglas Clark
Res Pract Technol Enhanc Learn. 2016; 11(1): 13. Published online 2016 May 21. doi: 10.1186/s41039-016-0036-2
PMCID:
PMC6302855
AbstractArticlePDF–1.4M
12.
SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines
Samuel Lampa, Martin Dahlö, Jonathan Alvarsson, Ola Spjuth
Gigascience. 2019 May; 8(5): giz044. Published online 2019 Apr 26. doi: 10.1093/gigascience/giz044
PMCID:
PMC6486472
AbstractArticlePDF–983K
13.
LexiRumah: An online lexical database of the Lesser Sunda Islands
Gereon A. Kaiping, Marian Klamer
PLoS One. 2018; 13(10): e0205250. Published online 2018 Oct 17. doi: 10.1371/journal.pone.0205250
PMCID:
PMC6192618
AbstractArticlePDF–1.7M
14.
General, open-source vertex modeling in biological applications using Tissue Forge
T. J. Sego, Tien Comlekoglu, Shayn M. Peirce, Douglas W. Desimone, James A. Glazier
Sci Rep. 2023; 13: 17886. Published online 2023 Oct 19. doi: 10.1038/s41598-023-45127-x
PMCID:
PMC10587242
AbstractArticlePDF–5.6M
15.
Programming biological models in Python using PySB
Carlos F Lopez, Jeremy L Muhlich, John A Bachman, Peter K Sorger
Mol Syst Biol. 2013; 9: 646. Published online 2013 Feb 19. doi: 10.1038/msb.2013.1
PMCID:
PMC3588907
AbstractArticlePDF–769K
16.
Learning Newtonian Physics through Programming Robot Experiments
Paola Ferrarelli, Luca Iocchi
Tech Know Learn. 2021; 26(4): 789–824. Published online 2021 Mar 18. doi: 10.1007/s10758-021-09508-3
PMCID:
PMC7971362
AbstractArticlePDF–2.5M
17.
The Database of Cross-Linguistic Colexifications, reproducible analysis of cross-linguistic polysemies
Christoph Rzymski, Tiago Tresoldi, Simon J. Greenhill, Mei-Shin Wu, Nathanael E. Schweikhard, Maria Koptjevskaja-Tamm, Volker Gast, Timotheus A. Bodt, Abbie Hantgan, Gereon A. Kaiping, Sophie Chang, Yunfan Lai, Natalia Morozova, Heini Arjava, Nataliia Hübler, Ezequiel Koile, Steve Pepper, Mariann Proos, Briana Van Epps, Ingrid Blanco, Carolin Hundt, Sergei Monakhov, Kristina Pianykh, Sallona Ramesh, Russell D. Gray, Robert Forkel, Johann-Mattis List
Sci Data. 2020; 7: 13. Published online 2020 Jan 13. doi: 10.1038/s41597-019-0341-x
PMCID:
PMC6957499
AbstractArticlePDF–2.6M
18.
MiniCERNBot Educational Platform: Antimatter Factory Mock-up Missions for Problem-Solving STEM Learning
Josep Marín Garcés, Carlos Veiga Almagro, Giacomo Lunghi, Mario Di Castro, Luca Rosario Buonocore, Raúl Marín Prades, Alessandro Masi
Sensors (Basel) 2021 Feb; 21(4): 1398. Published online 2021 Feb 17. doi: 10.3390/s21041398
PMCID:
PMC7922276
AbstractArticlePDF–51M
19.
S3QL: A distributed domain specific language for controlled semantic integration of life sciences data
Helena F Deus , Miriã C Correa, Romesh Stanislaus, Maria Miragaia, Wolfgang Maass, Hermínia de Lencastre, Ronan Fox, Jonas S Almeida
BMC Bioinformatics. 2011; 12: 285. Published online 2011 Jul 14. doi: 10.1186/1471-2105-12-285
PMCID:
PMC3155508
AbstractArticlePDF–1.9M
20.
Use of General-purpose Negation Detection to Augment Concept Indexing of Medical Documents: A Quantitative Study Using the UMLS
Pradeep G. Mutalik, Aniruddha Deshpande, Prakash M. Nadkarni
J Am Med Inform Assoc. 2001 Nov-Dec; 8(6): 598–609. doi: 10.1136/jamia.2001.0080598
PMCID:
PMC130070
AbstractArticlePDF–178K

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