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Items: 1 to 20 of 32

1.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
ArticlePDF–1.1M
2.
Using Two-Component Systems and other Bacterial Regulatory Factors for the Fabrication of Synthetic Genetic Devices
Alexander J. Ninfa, Stephen Selinsky, Nicolas Perry, Stephen Atkins, Qi Xiu Song, Avi Mayo, David Arps, Peter Woolf, Mariette R. Atkinson
Methods Enzymol. Author manuscript; available in PMC 2011 Mar 9.
Published in final edited form as: Methods Enzymol. 2007; 422: 488–512. doi: 10.1016/S0076-6879(06)22025-1
PMCID:
PMC3052260
ArticlePDF–2.0M
3.
α-Ketoglutarate Controls the Ability of the Escherichia coli PII Signal Transduction Protein To Regulate the Activities of NRII (NtrB) but Does Not Control the Binding of PII to NRII
Peng Jiang, Alexander J. Ninfa
Biochemistry. 2009 Dec 8; 48(48): 11514–11521. Published online 2009 Oct 30. doi: 10.1021/bi901158h
PMCID:
PMC2786246
ArticlePDF–1.2M
4.
Sensation and Signaling of α-Ketoglutarate and Adenylylate Energy Charge by the Escherichia coli PII Signal Transduction Protein Require Cooperation of the Three Ligand-Binding Sites within the PII Trimer
Peng Jiang, Alexander J. Ninfa
Biochemistry. 2009 Dec 8; 48(48): 11522–11531. Published online 2009 Oct 30. doi: 10.1021/bi9011594
PMCID:
PMC2786245
ArticlePDF–2.0M
5.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
ArticlePDF–141K
6.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
ArticlePDF–204K
7.
Mutations Altering the N-Terminal Receiver Domain of NRI (NtrC) That Prevent Dephosphorylation by the NRII-PII Complex in Escherichia coli
Augen A. Pioszak, Alexander J. Ninfa
J Bacteriol. 2004 Sep; 186(17): 5730–5740. doi: 10.1128/JB.186.17.5730-5740.2004
PMCID:
PMC516846
ArticlePDF–211K
8.
Interactions between the Nitrogen Signal Transduction Protein PII and N-Acetyl Glutamate Kinase in Organisms That Perform Oxygenic Photosynthesis
Sergio Burillo, Ignacio Luque, Inmaculada Fuentes, Asunción Contreras
J Bacteriol. 2004 Jun; 186(11): 3346–3354. doi: 10.1128/JB.186.11.3346-3354.2004
Correction in:
J Bacteriol. 2004 Aug; 186(16): 5555.
PMCID:
PMC415743
ArticlePDF–460K
9.
Expression of glnA in Escherichia coli is regulated at tandem promoters.
L J Reitzer, B Magasanik
Proc Natl Acad Sci U S A. 1985 Apr; 82(7): 1979–1983. doi: 10.1073/pnas.82.7.1979
PMCID:
PMC397465
SummaryPage BrowsePDF–1.5M
10.
Covalent modification of the glnG product, NRI, by the glnL product, NRII, regulates the transcription of the glnALG operon in Escherichia coli.
A J Ninfa, B Magasanik
Proc Natl Acad Sci U S A. 1986 Aug; 83(16): 5909–5913. doi: 10.1073/pnas.83.16.5909
PMCID:
PMC386406
SummaryPage BrowsePDF–1.5M
11.
The complete nucleotide sequence of the glnALG operon of Escherichia coli K12.
J Miranda-Ríos, R Sánchez-Pescador, M Urdea, A A Covarrubias
Nucleic Acids Res. 1987 Mar 25; 15(6): 2757–2770. doi: 10.1093/nar/15.6.2757
PMCID:
PMC340682
SummaryPage BrowsePDF–1.0M
12.
Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.
G Plunkett, 3rd, V Burland, D L Daniels, F R Blattner
Nucleic Acids Res. 1993 Jul 25; 21(15): 3391–3398. doi: 10.1093/nar/21.15.3391
PMCID:
PMC331436
SummaryPage BrowsePDF–1.4M
13.
Physical and genetic characterization of the glnA--glnG region of the Escherichia coli chromosome.
K Backman, Y M Chen, B Magasanik
Proc Natl Acad Sci U S A. 1981 Jun; 78(6): 3743–3747. doi: 10.1073/pnas.78.6.3743
PMCID:
PMC319648
SummaryPage BrowsePDF–1.0M
14.
Nitrogen regulatory locus "glnR" of enteric bacteria is composed of cistrons ntrB and ntrC: identification of their protein products.
N McFarland, L McCarter, S Artz, S Kustu
Proc Natl Acad Sci U S A. 1981 Apr; 78(4): 2135–2139. doi: 10.1073/pnas.78.4.2135
PMCID:
PMC319298
SummaryPage BrowsePDF–1.0M
15.
Probing the Escherichia coli glnALG upstream activation mechanism in vivo.
S Sasse-Dwight, J D Gralla
Proc Natl Acad Sci U S A. 1988 Dec; 85(23): 8934–8938. doi: 10.1073/pnas.85.23.8934
PMCID:
PMC282621
SummaryPage BrowsePDF–1.5M
16.
Phosphorylation of nitrogen regulator I (NRI) of Escherichia coli.
V Weiss, B Magasanik
Proc Natl Acad Sci U S A. 1988 Dec; 85(23): 8919–8923. doi: 10.1073/pnas.85.23.8919
PMCID:
PMC282618
SummaryPage BrowsePDF–1.2M
17.
Protein kinase and phosphoprotein phosphatase activities of nitrogen regulatory proteins NTRB and NTRC of enteric bacteria: roles of the conserved amino-terminal domain of NTRC.
J Keener, S Kustu
Proc Natl Acad Sci U S A. 1988 Jul; 85(14): 4976–4980. doi: 10.1073/pnas.85.14.4976
PMCID:
PMC281670
SummaryPage BrowsePDF–1.1M
18.
Regulation at the glnL-Operator-Promoter of the Complex glnALG Operon of Escherichia coli
Shizue Ueno-Nishio, Keith C. Backman, Boris Magasanik
J Bacteriol. 1983 Mar; 153(3): 1247–1251. doi: 10.1128/jb.153.3.1247-1251.1983
PMCID:
PMC221769
SummaryPage BrowsePDF–732K
19.
Characterization of a gene, glnL, the product of which is involved in the regulation of nitrogen utilization in Escherichia coli.
Y M Chen, K Backman, B Magasanik
J Bacteriol. 1982 Apr; 150(1): 214–220. doi: 10.1128/jb.150.1.214-220.1982
Correction in:
J Bacteriol. 1982 Aug; 151(2): 1067.
PMCID:
PMC220101
SummaryPage BrowsePDF–1.1M
20.
Complex glnA-glnL-glnG operon of Escherichia coli.
G Pahel, D M Rothstein, B Magasanik
J Bacteriol. 1982 Apr; 150(1): 202–213. doi: 10.1128/jb.150.1.202-213.1982
PMCID:
PMC220100
SummaryPage BrowsePDF–1.8M

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