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1.
The diversity of retrotransposons and the properties of their reverse transcriptases
Thomas H. Eickbush, Varuni K. Jamburuthugoda
Virus Res. Author manuscript; available in PMC 2009 Jun 14.
Published in final edited form as: Virus Res. 2008 Jun; 134(1-2): 221–234. Published online 2008 Feb 7. doi: 10.1016/j.virusres.2007.12.010
PMCID:
PMC2695964
ArticlePDF–511K
2.
The reverse transcriptase encoded by the non-LTR retrotransposon R2 is as error prone as that encoded by HIV-1
Varuni K. Jamburuthugoda, Thomas H. Eickbush
J Mol Biol. Author manuscript; available in PMC 2012 Apr 15.
Published in final edited form as: J Mol Biol. 2011 Apr 15; 407(5): 661–672. Published online 2011 Feb 12. doi: 10.1016/j.jmb.2011.02.015
PMCID:
PMC3062658
ArticlePDF–2.1M
3.
A Population Genetic Model for the Maintenance of R2 Retrotransposons in rRNA Gene Loci
Jun Zhou, Michael T. Eickbush, Thomas H. Eickbush
PLoS Genet. 2013 Jan; 9(1): e1003179. Published online 2013 Jan 10. doi: 10.1371/journal.pgen.1003179
PMCID:
PMC3542110
ArticlePDF–1.4M
4.
Evolution of the R2 Retrotransposon Ribozyme and Its Self-Cleavage Site
Danna G. Eickbush, William D. Burke, Thomas H. Eickbush
PLoS One. 2013; 8(9): e66441. Published online 2013 Sep 16. doi: 10.1371/journal.pone.0066441
PMCID:
PMC3774820
ArticlePDF–3.1M
5.
Origin of nascent lineages and the mechanisms used to prime second-strand DNA synthesis in the R1 and R2 retrotransposons of Drosophila
Deborah E Stage, Thomas H Eickbush
Genome Biol. 2009; 10(5): R49. Published online 2009 May 5. doi: 10.1186/gb-2009-10-5-r49
PMCID:
PMC2718515
ArticlePDF–984K
6.
Sequence variation within the rRNA gene loci of 12 Drosophila species
Deborah E. Stage, Thomas H. Eickbush
Genome Res. 2007 Dec; 17(12): 1888–1897. doi: 10.1101/gr.6376807
PMCID:
PMC2099596
ArticlePDF–534K
7.
Role of the Bombyx mori R2 element N-terminal domain in the target-primed reverse transcription (TPRT) reaction
Shawn M. Christensen, Arkadiusz Bibillo, Thomas H. Eickbush
Nucleic Acids Res. 2005; 33(20): 6461–6468. Published online 2005 Nov 10. doi: 10.1093/nar/gki957
PMCID:
PMC1283540
ArticlePDF–1.2M
8.
RNA-Induced Changes in the Activity of the Endonuclease Encoded by the R2 Retrotransposable Element
Jin Yang, Thomas H. Eickbush
Mol Cell Biol. 1998 Jun; 18(6): 3455–3465. doi: 10.1128/mcb.18.6.3455
PMCID:
PMC108926
ArticlePDF–1.5M
9.
Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements
Jin Yang, Harmit S. Malik, Thomas H. Eickbush
Proc Natl Acad Sci U S A. 1999 Jul 6; 96(14): 7847–7852. doi: 10.1073/pnas.96.14.7847
PMCID:
PMC22150
ArticlePDF–349K
10.
RNA from the 5′ end of the R2 retrotransposon controls R2 protein binding to and cleavage of its DNA target site
Shawn M. Christensen, Junqiang Ye, Thomas H. Eickbush
Proc Natl Acad Sci U S A. 2006 Nov 21; 103(47): 17602–17607. Published online 2006 Nov 14. doi: 10.1073/pnas.0605476103
PMCID:
PMC1693793
ArticlePDF–1.1M
11.
DNA-directed DNA polymerase and strand displacement activity of the reverse transcriptase encoded by the R2 retrotransposon
Anna Kurzynska-Kokorniak, Varuni Jamburuthugoda, Arkadiusz Bibillo, Thomas H. Eickbush
J Mol Biol. Author manuscript; available in PMC 2008 Nov 23.
Published in final edited form as: J Mol Biol. 2007 Nov 23; 374(2): 322–333. Published online 2007 Sep 20. doi: 10.1016/j.jmb.2007.09.047
PMCID:
PMC2121658
ArticlePDF–1.8M
12.
R1 and R2 retrotransposition and deletion in the rDNA loci on the X and Y chromosomes of Drosophila melanogaster.
César E Pérez-González, William D Burke, Thomas H Eickbush
Genetics. 2003 Oct; 165(2): 675–685. doi: 10.1093/genetics/165.2.675
PMCID:
PMC1462780
SummaryPDF–377K
13.
Rates of R1 and R2 retrotransposition and elimination from the rDNA locus of Drosophila melanogaster.
César E Pérez-González, Thomas H Eickbush
Genetics. 2002 Oct; 162(2): 799–811. doi: 10.1093/genetics/162.2.799
PMCID:
PMC1462293
SummaryPDF–305K
14.
Integration, regulation, and long-term stability of R2 retrotransposons
Thomas H. Eickbush, Danna G. Eickbush
Microbiol Spectr. Author manuscript; available in PMC 2015 Jul 10.
Published in final edited form as: Microbiol Spectr. 2015 Apr; 3(2): 10.1128/microbiolspec.MDNA3-0011-2014. doi: 10.1128/microbiolspec.MDNA3-0011-2014
PMCID:
PMC4498411
ArticlePDF–405K
15.
Dynamic Evolution of Euchromatic Satellites on the X Chromosome in Drosophila melanogaster and the simulans Clade
John S Sproul, Danielle E Khost, Danna G Eickbush, Sherif Negm, Xiaolu Wei, Isaac Wong, Amanda M Larracuente
Mol Biol Evol. 2020 Aug; 37(8): 2241–2256. Published online 2020 Mar 19. doi: 10.1093/molbev/msaa078
PMCID:
PMC7403614
ArticlePDF–3.7M
16.
Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci in Drosophila melanogaster
Daniel E. Khost, Danna G. Eickbush, Amanda M. Larracuente
Genome Res. 2017 May; 27(5): 709–721. doi: 10.1101/gr.213512.116
PMCID:
PMC5411766
ArticlePDF–1.2M
17.
A Mechanism for the Entrapment of DNA at an Air-Water Interface
Thomas H. Eickbush, Evangelos N. Moudrianakis
Biophys J. 1977 Jun; 18(3): 275–288. doi: 10.1016/S0006-3495(77)85613-0
PMCID:
PMC1473303
SummaryPage BrowsePDF–2.8M
18.
Chromatin Structure and Transcription of the R1- and R2-Inserted rRNA Genes of Drosophila melanogaster
Junqiang Ye, Thomas H. Eickbush
Mol Cell Biol. 2006 Dec; 26(23): 8781–8790. Published online 2006 Sep 25. doi: 10.1128/MCB.01409-06
PMCID:
PMC1636831
ArticlePDF–572K
19.
Characterization of Active R2 Retrotransposition in the rDNA Locus of Drosophila simulans
Xian Zhang, Thomas H. Eickbush
Genetics. 2005 May; 170(1): 195–205. doi: 10.1534/genetics.104.038703
PMCID:
PMC1449725
ArticlePDF–409K
20.
R2 Target-Primed Reverse Transcription: Ordered Cleavage and Polymerization Steps by Protein Subunits Asymmetrically Bound to the Target DNA
Shawn M. Christensen, Thomas H. Eickbush
Mol Cell Biol. 2005 Aug; 25(15): 6617–6628. doi: 10.1128/MCB.25.15.6617-6628.2005
PMCID:
PMC1190342
ArticlePDF–547K

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