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Select item 66307171.

A Preliminary Metagenome Analysis Based on a Combination of Protein Domains

Yoji Igarashi, Daisuke Mori, Susumu Mitsuyama, Kazutoshi Yoshitake, Hiroaki Ono, Tsuyoshi Watanabe, Yukiko Taniuchi, Tomoko Sakami, Akira Kuwata, Takanori Kobayashi, Yoshizumi Ishino, Shugo Watabe, Takashi Gojobori, Shuichi Asakawa

Proteomes. 2019 Jun; 7(2): 19. Published online 2019 Apr 29. doi: 10.3390/proteomes7020019

PMCID:: PMC6630717

Abstract Article PDF–3.0M

Select item 95610592.

Generalizable strategy to analyze domains in the context of parent protein architecture: A CheW case study

Luke R. Vass, Katie M. Branscum, Robert B. Bourret, Clay A. Foster

Proteins. Author manuscript; available in PMC 2023 Nov 1.

Published in final edited form as: Proteins. 2022 Nov; 90(11): 1973–1986. Published online 2022 Jun 20. doi: 10.1002/prot.26390

PMCID:: PMC9561059

Abstract Article PDF–2.0M

Select item 76143903.

Zinc finger structure determination by NMR: Why zinc fingers can be a handful

David Neuhaus

Prog Nucl Magn Reson Spectrosc. 2022 Jun-Aug; 130-131: 62–105. doi: 10.1016/j.pnmrs.2022.07.001

PMCID:: PMC7614390

Abstract Article

Select item 94299734.

Abstract Book for the 27^th Congress of the European Hematology Association

Hemasphere. 2022 Jun; 6(Suppl ): 1-4130. Published online 2022 Jun 23. doi: 10.1097/01.HS9.0000852292.38263.b8

PMCID:: PMC9429973

Article PDF–184M

Select item 57438435.

Award Winners and Abstracts of the 31st Annual Symposium of The Protein Society, Montreal, Canada, July 24–27, 2017

Protein Sci. 2017 Dec; 26(Suppl 1): 6–209. Published online 2017 Dec 27. doi: 10.1002/pro.3349

PMCID:: PMC5743843

Article PDF–1.6M

Select item 50311346.

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics

Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez

Version 3. F1000Res. 2016; 5: 1987. Published online 2017 Jun 27. doi: 10.12688/f1000research.9416.3

PMCID:: PMC5031134

Abstract Article PDF–5.2M

Select item 60702587.

Combining multi-scale modelling methods to decipher molecular motions of a branching sucrase from glycoside-hydrolase family 70

Akli Ben Imeddourene, Jérémy Esque, Isabelle André

PLoS One. 2018; 13(8): e0201323. Published online 2018 Aug 1. doi: 10.1371/journal.pone.0201323

PMCID:: PMC6070258

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Select item 86168188.

Assessment of domain interactions in CASP14

R. Dustin Schaeffer, Lisa Kinch, Andriy Kryshtafovych, Nick V. Grishin

Proteins. Author manuscript; available in PMC 2022 Dec 1.

Published in final edited form as: Proteins. 2021 Dec; 89(12): 1700–1710. Published online 2021 Sep 15. doi: 10.1002/prot.26225

PMCID:: PMC8616818

Abstract Article PDF–1.9M

Select item 26746559.

Spectral Analysis of Sequence Variability in Basic-Helix-loop-helix (bHLH) Protein Domains

Zhi Wang, William R. Atchley

Evol Bioinform Online. 2006; 2: 187–196. Published online 2007 Feb 9.

PMCID:: PMC2674655

Abstract Article PDF–1.3M

Select item 725110210.

Novel cultivated endophytic Verrucomicrobia reveal deep-rooting traits of bacteria to associate with plants

Wiebke Bünger, Xun Jiang, Jana Müller, Thomas Hurek, Barbara Reinhold-Hurek

Sci Rep. 2020; 10: 8692. Published online 2020 May 26. doi: 10.1038/s41598-020-65277-6

PMCID:: PMC7251102

Abstract Article PDF–4.9M

Select item 817764811.

Evaluation of residue-residue contact prediction methods: From retrospective to prospective

Huiling Zhang, Zhendong Bei, Wenhui Xi, Min Hao, Zhen Ju, Konda Mani Saravanan, Haiping Zhang, Ning Guo, Yanjie Wei

PLoS Comput Biol. 2021 May; 17(5): e1009027. Published online 2021 May 24. doi: 10.1371/journal.pcbi.1009027

PMCID:: PMC8177648

Abstract Article PDF–7.6M

Select item 785231412.

Proteomic fingerprints of damage in extracellular matrix assemblies

Alexander Eckersley, Matiss Ozols, Ronan O'Cualain, Emma-Jayne Keevill, April Foster, Suzanne Pilkington, David Knight, Christopher E.M. Griffiths, Rachel E.B. Watson, Michael J. Sherratt

Matrix Biol Plus. 2020 Feb; 5: 100027. Published online 2020 Jan 30. doi: 10.1016/j.mbplus.2020.100027

PMCID:: PMC7852314

Abstract Article PDF–2.3M

Select item 337612413.

Prediction of Protein Domain with mRMR Feature Selection and Analysis

Bi-Qing Li, Le-Le Hu, Lei Chen, Kai-Yan Feng, Yu-Dong Cai, Kuo-Chen Chou

PLoS One. 2012; 7(6): e39308. Published online 2012 Jun 15. doi: 10.1371/journal.pone.0039308

PMCID:: PMC3376124

Abstract Article PDF–635K

Select item 906367914.

Abstracts from the 54^th European Society of Human Genetics (ESHG) Conference: e-Posters

Eur J Hum Genet. 2022 Apr; 30(Suppl 1): 88–608. Published online 2022 Apr 7. doi: 10.1038/s41431-021-01026-1

PMCID:: PMC9063679

Article PDF–14M

Select item 839452415.

Disruption of RING and PHD Domains of TRIM28 Evokes Differentiation in Human iPSCs

Sylwia Mazurek, Urszula Oleksiewicz, Patrycja Czerwińska, Joanna Wróblewska, Marta Klimczak, Maciej Wiznerowicz

Cells. 2021 Aug; 10(8): 1933. Published online 2021 Jul 29. doi: 10.3390/cells10081933

PMCID:: PMC8394524

Abstract Article PDF–8.5M

Select item 1097029416.

Analysis of the Conformational Landscape of the N-Domains of the AAA ATPase p97: Disentangling the Continuous Conformational Variability in Partially Symmetrical Complexes

Sepideh Valimehr, Rémi Vuillemot, Mohsen Kazemi, Slavica Jonic, Isabelle Rouiller

Int J Mol Sci. 2024 Mar; 25(6): 3371. Published online 2024 Mar 16. doi: 10.3390/ijms25063371

PMCID:: PMC10970294

Abstract Article PDF–5.1M

Select item 662501717.

The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

Sarah Richards, Laura E. Rose

BMC Evol Biol. 2019; 19: 141. Published online 2019 Jul 11. doi: 10.1186/s12862-019-1467-3

PMCID:: PMC6625017

Abstract Article PDF–2.8M

Select item 1038291418.

Human aromatic amino acid decarboxylase is an asymmetric and flexible enzyme: Implication in aromatic amino acid decarboxylase deficiency

Giovanni Bisello, Rui P. Ribeiro, Massimiliano Perduca, Benny Danilo Belviso, Patrizia Polverino de' Laureto, Alejandro Giorgetti, Rocco Caliandro, Mariarita Bertoldi

Protein Sci. 2023 Aug; 32(8): e4732. Published online 2023 Aug 1. doi: 10.1002/pro.4732

PMCID:: PMC10382914

Abstract Article PDF–5.4M

Select item 781865219.

Chimeric Cellobiose Dehydrogenases Reveal the Function of Cytochrome Domain Mobility for the Electron Transfer to Lytic Polysaccharide Monooxygenase

Alfons K. G. Felice, Christian Schuster, Alan Kadek, Frantisek Filandr, Christophe V. F. P. Laurent, Stefan Scheiblbrandner, Lorenz Schwaiger, Franziska Schachinger, Daniel Kracher, Christoph Sygmund, Petr Man, Petr Halada, Chris Oostenbrink, Roland Ludwig

ACS Catal. 2021 Jan 15; 11(2): 517–532. Published online 2020 Dec 24. doi: 10.1021/acscatal.0c05294