Volvocales【植】 - PMC

Hisayoshi Nozaki, Wuttipong Mahakham, Sujeephon Athibai, Kayoko Yamamoto, Mari Takusagawa, Osami Misumi, Matthew D. Herron, Frank Rosenzweig, Masanobu Kawachi

Phycologia. Author manuscript; available in PMC 2018 Jan 26.

Published in final edited form as: Phycologia. 2017; 56(4): 469–475. Published online 2017 Apr 27. doi: 10.2216/17-3.1

PMCID:: PMC5785936

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Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey A. Farwagi, Karolina Fučíková, Hilary A. McManus

BMC Genomics. 2015; 16: 826. Published online 2015 Oct 21. doi: 10.1186/s12864-015-2056-5

PMCID:: PMC4618342

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Identification of Chlorophyceae based on 18S rDNA sequences from Persian Gulf

Raheem Haddad, Esmat Alemzadeh, Ali-Reza Ahmadi, Ramin Hosseini, Maryam Moezzi

Iran J Microbiol. 2014 Dec; 6(6): 437–442.

PMCID:: PMC4411431

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Comparative genomics of Chlamydomonas

Rory J Craig, Ahmed R Hasan, Rob W Ness, Peter D Keightley

Plant Cell. 2021 Apr; 33(4): 1016–1041. Published online 2021 Feb 2. doi: 10.1093/plcell/koab026

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Phytoene Desaturase Is Localized Exclusively in the Chloroplast and Up-Regulated at the mRNA Level during Accumulation of Secondary Carotenoids in Haematococcus pluvialis (Volvocales, Chlorophyceae)

Kay Grünewald, Manfred Eckert, Joseph Hirschberg, Christoph Hagen

Plant Physiol. 2000 Apr; 122(4): 1261–1268. doi: 10.1104/pp.122.4.1261

PMCID:: PMC58962

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Nuclear DNA Content Estimates in Green Algal Lineages: Chlorophyta and Streptophyta

Donald F. Kapraun

Ann Bot. 2007 Apr; 99(4): 677–701. Published online 2007 Feb 1. doi: 10.1093/aob/mcl294

PMCID:: PMC2802934

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Role of Sulfate Transporters in Chromium Tolerance in Scenedesmus acutus M. (Sphaeropleales)

Michele Ferrari, Radiana Cozza, Matteo Marieschi, Anna Torelli

Plants (Basel) 2022 Jan; 11(2): 223. Published online 2022 Jan 15. doi: 10.3390/plants11020223

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Assessing Combinability of Phylogenomic Data Using Bayes Factors

Suman Neupane, Karolina Fučíková, Louise A Lewis, Lynn Kuo, Ming-Hui Chen, Paul O Lewis

Syst Biol. 2019 Sep; 68(5): 744–754. Published online 2019 Feb 6. doi: 10.1093/sysbio/syz007

PMCID:: PMC7967903

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Molecular characterization of eukaryotic algal communities in the tropical phyllosphere based on real-time sequencing of the 18S rDNA gene

Huan Zhu, Shuyin Li, Zhengyu Hu, Guoxiang Liu

BMC Plant Biol. 2018; 18: 365. Published online 2018 Dec 18. doi: 10.1186/s12870-018-1588-7

PMCID:: PMC6299628

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Genomic structure and evolution of the mating type locus in the green seaweed Ulva partita

Tomokazu Yamazaki, Kensuke Ichihara, Ryogo Suzuki, Kenshiro Oshima, Shinichi Miyamura, Kazuyoshi Kuwano, Atsushi Toyoda, Yutaka Suzuki, Sumio Sugano, Masahira Hattori, Shigeyuki Kawano

Sci Rep. 2017; 7: 11679. Published online 2017 Sep 15. doi: 10.1038/s41598-017-11677-0

PMCID:: PMC5601483

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Chloroplast phylogenomic analysis of chlorophyte green algae identifies a novel lineage sister to the Sphaeropleales (Chlorophyceae)

Claude Lemieux, Antony T. Vincent, Aurélie Labarre, Christian Otis, Monique Turmel

BMC Evol Biol. 2015; 15: 264. Published online 2015 Dec 1. doi: 10.1186/s12862-015-0544-5

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Genomics of Volvocine Algae

James G. Umen, Bradley J.S.C. Olson

Adv Bot Res. Author manuscript; available in PMC 2015 Apr 14.

Published in final edited form as: Adv Bot Res. 2012; 64: 185–243. Published online 2012 Sep 25. doi: 10.1016/B978-0-12-391499-6.00006-2

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Testing for terrestrial and freshwater microalgae productivity under elevated CO₂ conditions and nutrient limitation

Anastasiia Kryvenda, Rudolf Tischner, Bastian Steudel, Carola Griehl, Robert Armon, Thomas Friedl

BMC Plant Biol. 2023; 23: 27. Published online 2023 Jan 13. doi: 10.1186/s12870-023-04042-z

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Stimulation and Isolation of Paraphysoderma sedebokerense (Blastocladiomycota) Propagules and Their Infection Capacity Toward Their Host Under Different Physiological and Environmental Conditions

Armine Asatryan, Sammy Boussiba, Aliza Zarka

Front Cell Infect Microbiol. 2019; 9: 72. Published online 2019 Mar 27. doi: 10.3389/fcimb.2019.00072

PMCID:: PMC6446968

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Fig. 2.

Loss of photosynthesis and convergent evolution of plastid-encoded gene repertoires in Volvocales. a Phylogenetic position of the chlamydomonad sp. NrCl902 in the 18S rRNA gene tree of Volvocales green algae. Non-photosynthetic lineages are highlighted in gray. Numbers at each branch show ML bootstrap values > 90%, whereas thick branches show the PhyloBayes posterior probabilities > 0.95. b Comparison of gene repertoires in plastid genomes of photosynthetic and non-photosynthetic Volvocales green algae. Genes highlighted in gray are those shared by plastid genomes of photosynthetic volvocales green algae and non-photosynthetic species, Polytoma and chlamydomonad sp. NrCl902, while genes highlighted in green are those present in plastid genomes of photosynthetic volvocales green algae but absent from those of the non-photosynthetic species. The plastid genome of Polytoma is represented by P. uvella. Protein-coding gene repertoires of the plastid genomes of P. uvella and chlamydomonad sp. NrCl902 are found to be identical. Note that Polytomella spp. are known to lack plastid DNAs completely []

A non-photosynthetic green alga illuminates the reductive evolution of plastid electron transport systems

BMC Biol. 2020;18:126.
Figure 4Four Different Species of Volvocales Algae

(A) Gonium pectorale, (B) Eudorina elegans, (C) Pleodorina californica, and (D) Volvox carteri. These are unicellular organisms that live in colonies and have both large and small gametes. Photo courtesy of Aurora M. Nedelcu, from the Volvocales Information Project (http:\\www.unbf.ca\vip\index.htm).

Everything You Always Wanted to Know about Sexes

PLoS Biol. 2004 Jun;2(6):e183.
Figure 2The morphology and phylogeny of the Volvocales

(A) Micrographs of Volvocine species and their relationship to each of David Kirk’s twelve steps of multicellular evolution (). (B) Phylogeny of selected Volvocales adapted from (; ). Species are color-coded based on morphology as indicated in panel (A). Asterisks indicate two isolates of Eudorina elegans that subsequently were reclassified as distinct species (; ).

Genomics of Volvocine Algae

Adv Bot Res. ;64:185-243.
Fig. 4

Maximum likelihood tree of Volvocales showing phylogenetic relationships of new obtained Volvocales and Jenufa clade OTUs and sequences retrieved from GenBank (https://www.ncbi.nlm.nih.gov/genbank/). Branches with asterisks indicate statistical support from SH-test, aBayesian test, maximum-likelihood bootstrap and internodes certainty ≥90, 0.90,90 and 0.90 respectively. The tree was rooted by Oedogoniales. Clades with present OTUs were colored in red

Molecular characterization of eukaryotic algal communities in the tropical phyllosphere based on real-time sequencing of the 18S rDNA gene

BMC Plant Biol. 2018;18:365.