PHYLOGENETIC SELECTION GUIDED SACCHAROMYCES CEREVISIAE S288C GLUCOSE F - PMC

Select item 68868741.

DNA variants affecting the expression of numerous genes in trans have diverse mechanisms of action and evolutionary histories

Sheila Lutz, Christian Brion, Margaret Kliebhan, Frank W. Albert

PLoS Genet. 2019 Nov; 15(11): e1008375. Published online 2019 Nov 18. doi: 10.1371/journal.pgen.1008375

PMCID:: PMC6886874

Abstract Article PDF–3.8M

Select item 68795582.

Mapping Ethanol Tolerance in Budding Yeast Reveals High Genetic Variation in a Wild Isolate

Roni Haas, Guy Horev, Ehud Lipkin, Inbar Kesten, Maya Portnoy, Keren Buhnik-Rosenblau, Morris Soller, Yechezkel Kashi

Front Genet. 2019; 10: 998. Published online 2019 Nov 20. doi: 10.3389/fgene.2019.00998

PMCID:: PMC6879558

Abstract Article PDF–2.2M

Select item 85325133.

Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection

Hongzhong Lu, Feiran Li, Le Yuan, Iván Domenzain, Rosemary Yu, Hao Wang, Gang Li, Yu Chen, Boyang Ji, Eduard J Kerkhoven, Jens Nielsen

Mol Syst Biol. 2021 Oct; 17(10): e10427. Published online 2021 Oct 22. doi: 10.15252/msb.202110427

PMCID:: PMC8532513

Abstract Article PDF–1.9M

Select item 69807814.

Widespread prion-based control of growth and differentiation strategies in Saccharomyces cerevisiae

Alan K. Itakura, Anupam K. Chakravarty, Christopher M. Jakobson, Daniel F. Jarosz

Mol Cell. Author manuscript; available in PMC 2021 Jan 16.

Published in final edited form as: Mol Cell. 2020 Jan 16; 77(2): 266–278.e6. Published online 2019 Nov 19. doi: 10.1016/j.molcel.2019.10.027

PMCID:: PMC6980781

Abstract Article PDF–2.1M

Select item 75861325.

Genome-scale metabolic reconstruction of the non-model yeast Issatchenkia orientalis SD108 and its application to organic acids production

Patrick F. Suthers, Hoang V. Dinh, Zia Fatma, Yihui Shen, Siu Hung Joshua Chan, Joshua D. Rabinowitz, Huimin Zhao, Costas D. Maranas

Metab Eng Commun. 2020 Dec; 11: e00148. Published online 2020 Oct 8. doi: 10.1016/j.mec.2020.e00148

PMCID:: PMC7586132

Abstract Article PDF–1.5M

Select item 53078566.

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Ronald P. de Vries, Robert Riley, Ad Wiebenga, Guillermo Aguilar-Osorio, Sotiris Amillis, Cristiane Akemi Uchima, Gregor Anderluh, Mojtaba Asadollahi, Marion Askin, Kerrie Barry, Evy Battaglia, Özgür Bayram, Tiziano Benocci, Susanna A. Braus-Stromeyer, Camila Caldana, David Cánovas, Gustavo C. Cerqueira, Fusheng Chen, Wanping Chen, Cindy Choi, Alicia Clum, Renato Augusto Corrêa dos Santos, André Ricardo de Lima Damásio, George Diallinas, Tamás Emri, Erzsébet Fekete, Michel Flipphi, Susanne Freyberg, Antonia Gallo, Christos Gournas, Rob Habgood, Matthieu Hainaut, María Laura Harispe, Bernard Henrissat, Kristiina S. Hildén, Ryan Hope, Abeer Hossain, Eugenia Karabika, Levente Karaffa, Zsolt Karányi, Nada Kraševec, Alan Kuo, Harald Kusch, Kurt LaButti, Ellen L. Lagendijk, Alla Lapidus, Anthony Levasseur, Erika Lindquist, Anna Lipzen, Antonio F. Logrieco, Andrew MacCabe, Miia R. Mäkelä, Iran Malavazi, Petter Melin, Vera Meyer, Natalia Mielnichuk, Márton Miskei, Ákos P. Molnár, Giuseppina Mulé, Chew Yee Ngan, Margarita Orejas, Erzsébet Orosz, Jean Paul Ouedraogo, Karin M. Overkamp, Hee-Soo Park, Giancarlo Perrone, Francois Piumi, Peter J. Punt, Arthur F. J. Ram, Ana Ramón, Stefan Rauscher, Eric Record, Diego Mauricio Riaño-Pachón, Vincent Robert, Julian Röhrig, Roberto Ruller, Asaf Salamov, Nadhira S. Salih, Rob A. Samson, Erzsébet Sándor, Manuel Sanguinetti, Tabea Schütze, Kristina Sepčić, Ekaterina Shelest, Gavin Sherlock, Vicky Sophianopoulou, Fabio M. Squina, Hui Sun, Antonia Susca, Richard B. Todd, Adrian Tsang, Shiela E. Unkles, Nathalie van de Wiele, Diana van Rossen-Uffink, Juliana Velasco de Castro Oliveira, Tammi C. Vesth, Jaap Visser, Jae-Hyuk Yu, Miaomiao Zhou, Mikael R. Andersen, David B. Archer, Scott E. Baker, Isabelle Benoit, Axel A. Brakhage, Gerhard H. Braus, Reinhard Fischer, Jens C. Frisvad, Gustavo H. Goldman, Jos Houbraken, Berl Oakley, István Pócsi, Claudio Scazzocchio, Bernhard Seiboth, Patricia A. vanKuyk, Jennifer Wortman, Paul S. Dyer, Igor V. Grigoriev

Genome Biol. 2017; 18: 28. Published online 2017 Feb 14. doi: 10.1186/s13059-017-1151-0

PMCID:: PMC5307856

Abstract Article PDF–8.9M

Select item 60070727.

The genome of Rhizophagus clarus HR1 reveals a common genetic basis for auxotrophy among arbuscular mycorrhizal fungi

Yuuki Kobayashi, Taro Maeda, Katsushi Yamaguchi, Hiromu Kameoka, Sachiko Tanaka, Tatsuhiro Ezawa, Shuji Shigenobu, Masayoshi Kawaguchi

BMC Genomics. 2018; 19: 465. Published online 2018 Jun 18. doi: 10.1186/s12864-018-4853-0

PMCID:: PMC6007072

Abstract Article PDF–1.5M

Select item 79812888.

Reconstructing organisms in silico: genome-scale models and their emerging applications

Xin Fang, Colton J. Lloyd, Bernhard O. Palsson

Nat Rev Microbiol. Author manuscript; available in PMC 2021 Jul 28.

Published in final edited form as: Nat Rev Microbiol. 2020 Dec; 18(12): 731–743. Published online 2020 Sep 21. doi: 10.1038/s41579-020-00440-4

PMCID:: PMC7981288

Abstract Article PDF–1.5M

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