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Select item 68291241.

Construction of High-Resolution RAD-Seq Based Linkage Map, Anchoring Reference Genome, and QTL Mapping of the Sex Chromosome in the Marine Medaka Oryzias melastigma

Bo-Young Lee, Min-Sub Kim, Beom-Soon Choi, Atsushi J. Nagano, Doris Wai Ting Au, Rudolf Shiu Sun Wu, Yusuke Takehana, Jae-Seong Lee

G3 (Bethesda) 2019 Nov; 9(11): 3537–3545. Published online 2019 Sep 17. doi: 10.1534/g3.119.400708

PMCID:: PMC6829124

Abstract Article PDF–1.4M

Select item 43522422.

Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes

Keng Po Lai, Jing-Woei Li, Simon Yuan Wang, Jill Man-Ying Chiu, Anna Tse, Karen Lau, Si Lok, Doris Wai-Ting Au, William Ka-Fai Tse, Chris Kong-Chu Wong, Ting-Fung Chan, Richard Yuen-Chong Kong, Rudolf Shiu-Sun Wu

BMC Genomics. 2015; 16(1): 135. Published online 2015 Feb 27. doi: 10.1186/s12864-015-1325-7

PMCID:: PMC4352242

Abstract Article PDF–1.0M

Select item 74939093.

Long-read sequencing and de novo genome assembly of marine medaka (Oryzias melastigma)

Pingping Liang, Hafiz Sohaib Ahmed Saqib, Xiaomin Ni, Yingjia Shen

BMC Genomics. 2020; 21: 640. Published online 2020 Sep 16. doi: 10.1186/s12864-020-07042-7

PMCID:: PMC7493909

Abstract Article PDF–1.9M

Select item 39587664.

Development of a Promising Fish Model (Oryzias melastigma) for Assessing Multiple Responses to Stresses in the Marine Environment

Sijun Dong, Mei Kang, Xinlong Wu, Ting Ye

Biomed Res Int. 2014; 2014: 563131. Published online 2014 Mar 3. doi: 10.1155/2014/563131

PMCID:: PMC3958766

Abstract Article PDF–679K

Select item 34042815.

Gender-specific modulation of immune system complement gene expression in marine medaka Oryzias melastigma following dietary exposure of BDE-47

Roy R. Ye, Elva N. Y. Lei, Michael H. W. Lam, Alice K. Y. Chan, Jun Bo, Jason P. van de Merwe, Amy C. C. Fong, Michael M. S. Yang, J. S. Lee, Helmut E. Segner, Chris K. C. Wong, Rudolf S. S. Wu, Doris W. T. Au

Environ Sci Pollut Res Int. 2012; 19(7): 2477–2487. Published online 2012 Jul 21. doi: 10.1007/s11356-012-0887-z

PMCID:: PMC3404281

Abstract Article PDF–345K

Select item 91018826.

Transcriptional Contribution of Transposable Elements in Relation to Salinity Conditions in Teleosts and Silencing Mechanisms Involved

Elisa Carotti, Federica Carducci, Samuele Greco, Marco Gerdol, Daniele Di Marino, Nunzio Perta, Anna La Teana, Adriana Canapa, Marco Barucca, Maria Assunta Biscotti

Int J Mol Sci. 2022 May; 23(9): 5215. Published online 2022 May 6. doi: 10.3390/ijms23095215

PMCID:: PMC9101882

Abstract Article PDF–2.1M

Select item 73371907.

Orthologous Divergence and Paralogous Anticonvergence in Molecular Evolution of Triplicated Green Opsin Genes in Medaka Fish, Genus Oryzias

Yoshifumi Matsumoto, Shoji Oda, Hiroshi Mitani, Shoji Kawamura

Genome Biol Evol. 2020 Jun; 12(6): 911–923. Published online 2020 May 28. doi: 10.1093/gbe/evaa111

PMCID:: PMC7337190

Abstract Article PDF–894K

Select item 42116948.

Identification and Expression Profiling of MicroRNAs in the Brain, Liver and Gonads of Marine Medaka (Oryzias melastigma) and in Response to Hypoxia

Karen Lau, Keng Po Lai, Jessie Yun Juan Bao, Na Zhang, Anna Tse, Amy Tong, Jing Woei Li, Si Lok, Richard Yuen Chong Kong, Wing Yee Lui, Alice Wong, Rudolf Shiu Sun Wu

PLoS One. 2014; 9(10): e110698. Published online 2014 Oct 28. doi: 10.1371/journal.pone.0110698

Correction in:: PLoS One. 2015; 10(1): e0117543.

PMCID:: PMC4211694

Abstract Article PDF–713K

Select item 15785799.

Hypoxia induces telomerase reverse transcriptase (TERT) gene expression in non-tumor fish tissues in vivo: the marine medaka (Oryzias melastigma) model

Richard MK Yu, Eric XH Chen, Richard YC Kong, Patrick KS Ng, Helen OL Mok, Doris WT Au

BMC Mol Biol. 2006; 7: 27. Published online 2006 Sep 11. doi: 10.1186/1471-2199-7-27

PMCID:: PMC1578579

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Select item 369147110.

Oryzias melastigma – an effective substitute for exotic larvicidal fishes: enhancement of its reproductive potential by supplementary feeding

Abir Lal Dutta, Sajal Kumar Dey, Debargha Chakraborty, Asim Kumar Manna, Pankaj Kumar Manna

Springerplus. 2013; 2: 235. Published online 2013 May 24. doi: 10.1186/2193-1801-2-235

PMCID:: PMC3691471

Abstract Article PDF–183K

Select item 1084799911.

Exposure to tris (1,3-dichloro-2-propyl) phosphate affects the embryonic cardiac development of Oryzias melastigma

Chenshi Wang, Wei Lei, Chengchen Jiang, Lichao Du, Xindi Huang, Xiaoyu Cui, Dongxu Gao, Hua Wang

Heliyon. 2024 Feb 15; 10(3): e25554. Published online 2024 Feb 1. doi: 10.1016/j.heliyon.2024.e25554

PMCID:: PMC10847999

Abstract Article PDF–2.5M

Select item 460797412.

Marine medaka ATP-binding cassette (ABC) superfamily and new insight into teleost Abch nomenclature

Chang-Bum Jeong, Bo-Mi Kim, Hye-Min Kang, Ik-Young Choi, Jae-Sung Rhee, Jae-Seong Lee

Sci Rep. 2015; 5: 15409. Published online 2015 Oct 16. doi: 10.1038/srep15409

PMCID:: PMC4607974

Abstract Article PDF–1.3M

Select item 398702713.

Toxicity and Estrogenic Endocrine Disrupting Activity of Phthalates and Their Mixtures

Xueping Chen, Shisan Xu, Tianfeng Tan, Sin Ting Lee, Shuk Han Cheng, Fred Wang Fat Lee, Steven Jing Liang Xu, Kin Chung Ho

Int J Environ Res Public Health. 2014 Mar; 11(3): 3156–3168. Published online 2014 Mar 14. doi: 10.3390/ijerph110303156

PMCID:: PMC3987027

Abstract Article PDF–544K

Select item 739659614.

A Novel Antimicrobial Peptide Scyreprocin From Mud Crab Scylla paramamosain Showing Potent Antifungal and Anti-biofilm Activity

Ying Yang, Fangyi Chen, Hui-Yun Chen, Hui Peng, Hua Hao, Ke-Jian Wang

Front Microbiol. 2020; 11: 1589. Published online 2020 Jul 24. doi: 10.3389/fmicb.2020.01589

PMCID:: PMC7396596

Abstract Article PDF–6.9M

Select item 1081243815.

Toxic Effects of Bisphenol AF Exposure on the Reproduction and Liver of Female Marine Medaka (Oryzias melastigma)

Huichen Li, Jiahao Gao, Yue Liu, Yujia Ding, Yusong Guo, Zhongduo Wang, Zhongdian Dong, Ning Zhang

Animals (Basel) 2024 Jan; 14(2): 222. Published online 2024 Jan 10. doi: 10.3390/ani14020222

PMCID:: PMC10812438

Abstract Article PDF–5.8M

Select item 773244716.

Germline Specific Expression of a vasa Homologue Gene in the Viviparous Fish Black Rockfish (Sebastes schlegelii) and Functional Analysis of the vasa 3′ Untranslated Region

Li Zhou, Xueying Wang, Shuran Du, Yanfeng Wang, Haixia Zhao, Tengfei Du, Jiachen Yu, Lele Wu, Zongcheng Song, Qinghua Liu, Jun Li

Front Cell Dev Biol. 2020; 8: 575788. Published online 2020 Oct 28. doi: 10.3389/fcell.2020.575788

PMCID:: PMC7732447

Abstract Article PDF–7.6M

Select item 960441617.

Transcriptomic Analysis in Marine Medaka Gill Reveals That the Hypo-Osmotic Stress Could Alter the Immune Response via the IL17 Signaling Pathway

Rong Li, Jiaqi Liu, Chi Tim Leung, Xiao Lin, Ting Fung Chan, William Ka Fai Tse, Keng Po Lai

Int J Mol Sci. 2022 Oct; 23(20): 12417. Published online 2022 Oct 17. doi: 10.3390/ijms232012417

PMCID:: PMC9604416

Abstract Article PDF–2.4M

Select item 487759218.

Novel insights into iron regulation and requirement in marine medaka Oryzias melastigma

Jian Wang, Wen-Xiong Wang

Sci Rep. 2016; 6: 26615. Published online 2016 May 24. doi: 10.1038/srep26615

PMCID:: PMC4877592

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Select item 791121219.

Transgenerational Effects of Hexavalent Chromium on Marine Medaka (Oryzias melastigma) Reveal Complex Transgenerational Adaptation in Offspring

Xiaomin Ni, Yingjia Shen

Biomolecules. 2021 Feb; 11(2): 138. Published online 2021 Jan 22. doi: 10.3390/biom11020138

PMCID:: PMC7911212

Abstract Article PDF–3.3M

Select item 493219620.

Hypoxia causes transgenerational impairments in reproduction of fish

Simon Yuan Wang, Karen Lau, Keng-Po Lai, Jiang-Wen Zhang, Anna Chung-Kwan Tse, Jing-Woei Li, Yin Tong, Ting-Fung Chan, Chris Kong-Chu Wong, Jill Man-Ying Chiu, Doris Wai-Ting Au, Alice Sze-Tsai Wong, Richard Yuen-Chong Kong, Rudolf Shiu-Sun Wu

Nat Commun. 2016; 7: 12114. Published online 2016 Jul 4. doi: 10.1038/ncomms12114

PMCID:: PMC4932196

Abstract Article PDF–1.4M

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Figure 2

Genome-wide comparison of the genomic sequences between Oryzias melastigma and Oryzias latipes using Mummer. Red and blue dots represent forward and reverse match, respectively.

Construction of High-Resolution RAD-Seq Based Linkage Map, Anchoring Reference Genome, and QTL Mapping of the Sex Chromosome in the Marine Medaka Oryzias melastigma

G3 (Bethesda). 2019 Nov;9(11):3537-3545.
Figure 2

Transcriptome divergence between marine and freshwater medaka. A) Nucleotide identity between Oryzias melastigma and Oryzias latipes orthologs deposited in the NCBI nucleotide database. Only those with an alignment length >75% are shown. B) Nucleotide identity between all O. melastigma and O. latipes orthologs. C) Low mapping rate of O. melastigma RNA-Seq data generated in this study onto the O. latipes UniGENE dataset. The mapping rate is highest for liver and lowest for brain. D) The nucleotide identity between transcripts (Ensemble Assembly) assembled in this study and the O. latipes UniGENE dataset. Only those with alignment length >75% are shown.

Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes

BMC Genomics. 2015;16(1):135.
Figure 1

A linkage map of the marine medaka Oryzias melastigma. The map consists of 24 linkage groups and the bars on each linkage group represents single nucleotide polymorphism (SNP) markers. Colors of bars indicate the reference-assisted chromosome assembly scaffolds that SNP was extracted. (Name, sequences, and position of SNP are included in the Suppl. File 1.)

Construction of High-Resolution RAD-Seq Based Linkage Map, Anchoring Reference Genome, and QTL Mapping of the Sex Chromosome in the Marine Medaka Oryzias melastigma

G3 (Bethesda). 2019 Nov;9(11):3537-3545.
Figure 1.

Molecular phylogeny tree of Cheilopogon unicolor, C. arcticeps, C. atrisignis and other 15 species in Beloniformes based on the complete mitogenome. The complete mitogenomes were downloaded from GenBank and the phylogenic tree was constructed by the Maximum parsimony method with 1000 bootstrap replicates. The gene’s accession numbers for tree construction are listed as follows: Hyporhamphus sajori (AB370892), Hyporhamphus intermedius (KP260625), Strongylura anastomella (KP864662), Cololabis saira (AP002932), Ablennes hians (AB373007), Oryzias sinensis (GU013788), Oryzias sarasinorum (AB370891), Oryzias minutillus (AB498068), Oryzias melastigma (JQ713914), Oryzias luzonensis (AB498064), Oryzias javanicus (AB498067), Oryzias dancena (AB498069), Oryzias latipes (AP004421), Exocoetus volitans (AP002933) and Cypselurus hiraii (AB182653).

Complete mitogenome of three flyingfishes Cheilopogon unicolor, Cheilopogon arcticeps and Cheilopogon atrisignis (Teleostei: Exocoetidae)

Mitochondrial DNA B Resour. 2016;1(1):134-135.