Mycobacterium chlorophenolicum - PMC

Imen Nouioui, Lorena Carro, Marina García-López, Jan P. Meier-Kolthoff, Tanja Woyke, Nikos C. Kyrpides, Rüdiger Pukall, Hans-Peter Klenk, Michael Goodfellow, Markus Göker

Front Microbiol. 2018; 9: 2007. Published online 2018 Aug 22. doi: 10.3389/fmicb.2018.02007

PMCID:: PMC6113628

Abstract Article PDF–5.3M

Select item 1679225.

Rapid and sensitive method for the detection of Mycobacterium chlorophenolicum PCP-1 in soil based on 16S rRNA gene-targeted PCR.

M Briglia, R I Eggen, W M de Vos, J D van Elsas

Appl Environ Microbiol. 1996 Apr; 62(4): 1478–1480. doi: 10.1128/aem.62.4.1478-1480.1996

PMCID:: PMC167922

Summary PDF–226K

Select item 928596.

Mycobacterium Diversity and Pyrene Mineralization in Petroleum-Contaminated Soils

Pui-Yi Cheung, Brian K. Kinkle

Appl Environ Microbiol. 2001 May; 67(5): 2222–2229. doi: 10.1128/AEM.67.5.2222-2229.2001

PMCID:: PMC92859

Abstract Article PDF–1.2M

Select item 58571677.

Careful use of 16S rRNA gene sequence similarity values for the identification of Mycobacterium species

M. Beye, N. Fahsi, D. Raoult, P.-E. Fournier

New Microbes New Infect. 2018 Mar; 22: 24–29. Published online 2017 Dec 29. doi: 10.1016/j.nmni.2017.12.009

PMCID:: PMC5857167

Abstract Article PDF–1.3M

Select item 13889968.

Accelerated Mineralization of Pentachlorophenol in Soil upon Inoculation with Mycobacterium chlorophenolicum PCP1 and Sphingomonas chlorophenolica RA2

R. Miethling, U. Karlson

Appl Environ Microbiol. 1996 Dec; 62(12): 4361–4366. doi: 10.1128/aem.62.12.4361-4366.1996

PMCID:: PMC1388996

Summary PDF–245K

Select item 105178689.

Characterization of three rapidly growing novel Mycobacterium species with significant polycyclic aromatic hydrocarbon bioremediation potential

Yang Deng, Tong Mou, Junhuan Wang, Jing Su, Yanchun Yan, Yu-Qin Zhang

Front Microbiol. 2023; 14: 1225746. Published online 2023 Sep 8. doi: 10.3389/fmicb.2023.1225746

PMCID:: PMC10517868

Abstract Article PDF–1.9M

Select item 421162010.

Structural characterization of 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA) from Sphingobium chlorophenolicum, a new type of aromatic ring-cleavage enzyme

Robert P. Hayes, Abigail R. Green, Mark S. Nissen, Kevin M. Lewis, Luying Xun, ChulHee Kang

Mol Microbiol. Author manuscript; available in PMC 2014 Oct 28.

Published in final edited form as: Mol Microbiol. 2013 May; 88(3): 523–536. Published online 2013 Mar 26. doi: 10.1111/mmi.12204

PMCID:: PMC4211620

Abstract Article PDF–2.2M

Select item 371550411.

Prospecting Environmental Mycobacteria: Combined Molecular Approaches Reveal Unprecedented Diversity

Alessandra Pontiroli, Tanya T. Khera, Brian B. Oakley, Sam Mason, Scot E. Dowd, Emma R. Travis, Girum Erenso, Abraham Aseffa, Orin Courtenay, Elizabeth M. H. Wellington

PLoS One. 2013; 8(7): e68648. Published online 2013 Jul 18. doi: 10.1371/journal.pone.0068648

PMCID:: PMC3715504

Abstract Article PDF–623K

Select item 12468712.

Degradation of Morpholine by an Environmental Mycobacterium Strain Involves a Cytochrome P-450

P. Poupin, N. Truffaut, B. Combourieu, P. Besse, M. Sancelme, H. Veschambre, A. M. Delort

Appl Environ Microbiol. 1998 Jan; 64(1): 159–165. doi: 10.1128/aem.64.1.159-165.1998

PMCID:: PMC124687

Abstract Article PDF–188K

Select item 496964713.

Draft genome sequence of Mycobacterium rufum JS14^T, a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii

Yunyoung Kwak, Qing X. Li, Jae-Ho Shin

Stand Genomic Sci. 2016; 11: 47. Published online 2016 Aug 2. doi: 10.1186/s40793-016-0167-5

PMCID:: PMC4969647

Abstract Article PDF–1.1M

Select item 1012766814.

Tuberculostearic Acid Controls Mycobacterial Membrane Compartmentalization

Malavika Prithviraj, Takehiro Kado, Jacob A. Mayfield, David C. Young, Annie D. Huang, Daisuke Motooka, Shota Nakamura, M. Sloan Siegrist, D. Branch Moody, Yasu S. Morita

mBio. 2023 Mar-Apr; 14(2): e03396-22. Published online 2023 Mar 28. doi: 10.1128/mbio.03396-22

PMCID:: PMC10127668

Abstract Article PDF–4.6M

Select item 391606515.

Comparative evaluation of three immunochromatographic identification tests for culture confirmation of Mycobacterium tuberculosis complex

Kinuyo Chikamatsu, Akio Aono, Hiroyuki Yamada, Tetsuhiro Sugamoto, Tomoko Kato, Yuko Kazumi, Kiyoko Tamai, Hideji Yanagisawa, Satoshi Mitarai

BMC Infect Dis. 2014; 14: 54. Published online 2014 Feb 1. doi: 10.1186/1471-2334-14-54

PMCID:: PMC3916065

Abstract Article PDF–258K

Select item 144903816.

Distribution of Environmental Mycobacteria in Karonga District, Northern Malawi

Benson Z. Chilima, Ian M. Clark, Sian Floyd, Paul E. M. Fine, Penny R. Hirsch

Appl Environ Microbiol. 2006 Apr; 72(4): 2343–2350. doi: 10.1128/AEM.72.4.2343-2350.2006

PMCID:: PMC1449038

Abstract Article PDF–205K

Select item 476728217.

Dynamics of bacterial populations during bench‐scale bioremediation of oily seawater and desert soil bioaugmented with coastal microbial mats

Nidaa Ali, Narjes Dashti, Samar Salamah, Naser Sorkhoh, Husain Al‐Awadhi, Samir Radwan

Microb Biotechnol. 2016 Mar; 9(2): 157–171. Published online 2016 Jan 11. doi: 10.1111/1751-7915.12326

PMCID:: PMC4767282

Abstract Article PDF–1.9M

Select item 44630118.

Assessment of Partial Sequencing of the 65-Kilodalton Heat Shock Protein Gene (hsp65) for Routine Identification of Mycobacterium Species Isolated from Clinical Sources

Alan McNabb, Diane Eisler, Kathy Adie, Marie Amos, Mabel Rodrigues, Gwen Stephens, William A. Black, Judith Isaac-Renton

J Clin Microbiol. 2004 Jul; 42(7): 3000–3011. doi: 10.1128/JCM.42.7.3000-3011.2004

PMCID:: PMC446301

Abstract Article PDF–195K

Select item 312275019.

Web-Accessible Database of hsp65 Sequences from Mycobacterium Reference Strains

Jianli Dai, Yuansha Chen, Michael Lauzardo

J Clin Microbiol. 2011 Jun; 49(6): 2296–2303. doi: 10.1128/JCM.02602-10

PMCID:: PMC3122750

Abstract Article PDF–612K

Select item 1059368320.

Mycobacteriaceae Phenome Atlas (MPA): A Standardized Atlas for the Mycobacteriaceae Phenome Based on Heterogeneous Sources

Wan Liu, Hui Cen, Zhile Wu, Haokui Zhou, Shuo Chen, Xilan Yang, Guoping Zhao, Guoqing Zhang

Phenomics. 2023 Oct; 3(5): 439–456. Published online 2023 Jun 13. doi: 10.1007/s43657-023-00101-5

PMCID:: PMC10593683

Abstract Article PDF–4.3M

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FIG. 7

Characteristic UV-HPLC chromatograms of Mycobacterium species that have widely separated, double-peak clusters with prominent peaks in the early cluster that emerge prior to 5.0 min. (A) Mycobacterium aichiense ATCC 27280^T; (B) Mycobacterium chlorophenolicum ATCC 49826^T; (C) Mycobacterium diernhoferi ATCC 19340^T; (D) M. flavescens ATCC 14474^T (underlined peaks are not present in all strains); (E) Mycobacterium gadium ATCC 27726^T; (F) Mycobacterium gilvum ATCC 43909; (G) M. hiberniae ATCC 49874^T; (H) Mycobacterium komossense ATCC 33013^T; (I) Mycobacterium madagascariense ATCC 49865^T; (J) M. mucogenicum ATCC 49651; (K) M. neoaurum ATCC 25795^T; (L) Mycobacterium phlei ATCC 11758^T; (M) Mycobacterium rhodesiae ATCC 27024^T; (N) Mycobacterium sphagni ATCC 33027.

Mycolic Acid Analysis by High-Performance Liquid Chromatography for Identification of Mycobacterium Species

Clin Microbiol Rev. 2001 Oct;14(4):704-726.
FIG. 3

Neighbor-joining tree for sequences of 17 excised TGGE bands, strains of known Mycobacterium spp., and N. farcinica used as an outgroup. The scale bar corresponds to 0.01 estimated nucleotide substitution per sequence position. The 17 sequenced bands (GenBank accession numbers) are as follows: AC-1 (AF294742), AT-3 (AF220427), CC-4 (AF330695), CT-9 (AF294743), CT-10 (AF294744), CT-11 (AF220428), CT-12 (AF220429), CT-24 (AF294745), CT-25 (AF294746), JC-13 (AF294747), JC-14 (AF294748), JT-15 (AF220430), KT-19 (AF220431), KT-22 (AF220432), KT-23 (AF220433), KT-26 (AF294749), and KT-27 (AF294750). The 11 Mycobacterium spp. and the outgroup (accession numbers) are as follows: M. fluoroanthenivorans (AJ276274), Mycobacterium sp. strain LB501T (AJ245702), Mycobacterium sp. strain CH-1 (AF054278), Mycobacterium sp. strain RJGII-135 (U30661), M. flavescens (X52932), M. monacense (AF107039), Mycobacterium sp. strain U46146 (U46146), Mycobacterium sp. strain PYR-1 (U30662), M. austroafricanum (X93182), M. chlorophenolicum (X81926), Mycobacterium sp. strain TA5 (AB028483), and N. farcinica (X91041).

Mycobacterium Diversity and Pyrene Mineralization in Petroleum-Contaminated Soils

Appl Environ Microbiol. 2001 May;67(5):2222-2229.
Figure 6

Bacterial degradation pathways for pentachlorophenol in Sphingomonas chlorophenolicum L-1 (a), and Mycobacterium strains (b).

Bacterial degradation of chlorophenols and their derivatives

Microb Cell Fact. 2014;13:31-31.
Figure 26.

Different pathways for degradation of nitrotoluene by Pseudomonas sp. 4NT () and Mycobacterium Strain HL 4_NT-1 (, ) (top) and degradation of pentachlorophenol by Sphingobium chlorophenolicum (-) and Rhodococcus chlorophenolicus () (bottom) have emerged in bacteria isolated from contaminated sites.

The physical basis and practical consequences of biological promiscuity

Phys Biol. :10.1088/1478-3975/ab8697.